View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14070_low_2 (Length: 496)
Name: NF14070_low_2
Description: NF14070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14070_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 156 - 473
Target Start/End: Original strand, 24543623 - 24543940
Alignment:
| Q |
156 |
tcttaacattattttctccaacaggcattgatgaaacaagtacatgttatacttgtgtgttgtgtgggaaagatttagaagataaagaggcagaggaaga |
255 |
Q |
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| T |
24543623 |
tcttaacattattttctccaacaggcattgatgaaacaagtacatgttatacttgtgtgttgtgtgggaaagatttagaagaggaagaggaagaggaaga |
24543722 |
T |
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| Q |
256 |
ttcaattcaagatggagaagatgagctacaacattatttattctcttcccaaggaagagaagatttgagtagtactgttttatctgaagttgctattctt |
355 |
Q |
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| T |
24543723 |
ttcaattcaagatggagaagatgagctacaacattatttattctcttcccaaggaagagaagatttgagtagtactgttttatctgaagttgctattctt |
24543822 |
T |
|
| Q |
356 |
ccatgcagtcatatattccacgagacatgtttatctgctttgcccctaactactatcactgatcctccatgccctatatgtcttagtatgtcctgaattg |
455 |
Q |
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| T |
24543823 |
ccatgcagtcatatattccacgagacatgtttatctgctttgcccctaactactatcactgatcctccatgccctatatgtcttagtatgtcctgaattg |
24543922 |
T |
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| Q |
456 |
attttcacttatactatt |
473 |
Q |
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| T |
24543923 |
attttcacttatactatt |
24543940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 24543447 - 24543540
Alignment:
| Q |
16 |
ctcatgtattgattttttatgcatctaactccttttaagtgaataactcactttaattatagttcaaagtaaatattatcaaccattgattaac |
109 |
Q |
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| T |
24543447 |
ctcatgtattgattttttatgcatctaactccttttaagtgaataactcactttaattatagttcaaagtaaatattatcaaccattgattaac |
24543540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 24543541 - 24543595
Alignment:
| Q |
89 |
tattatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataac |
143 |
Q |
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| T |
24543541 |
tattatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataac |
24543595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 39421626 - 39421574
Alignment:
| Q |
92 |
tatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataaca |
144 |
Q |
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| T |
39421626 |
tatcaaccattgattaacaaatcaaaggtagatattagaagtacaccataaca |
39421574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 3859436 - 3859408
Alignment:
| Q |
95 |
caaccattgattaacaaatcaaagttaga |
123 |
Q |
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| T |
3859436 |
caaccattgattaacaaatcaaagttaga |
3859408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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