View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14070_low_3 (Length: 468)
Name: NF14070_low_3
Description: NF14070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14070_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 13 - 449
Target Start/End: Complemental strand, 6189872 - 6189436
Alignment:
| Q |
13 |
cagataaggatgaaaaagcaaatgagtatccgcaggtaaaatgagcgtgcaacccaaaagttaatttgcgatctgaattgtctgattataaatgtgagta |
112 |
Q |
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| T |
6189872 |
cagataaggatgaaaaagcaaatgagtatccgcaggtaaaatgagcgtgcaacccaaaagttaatttgcgatctgaattgtctgattataaatgtgagta |
6189773 |
T |
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| Q |
113 |
agttgaagatgccacttgttcatcatcagactcctattgttctagttattttgttggtagaatcatattgatgcactagcnnnnnnntccattgcacatg |
212 |
Q |
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| T |
6189772 |
agttgaacatgccacttgttcatcatcagactcctattgttctagttattttgttggtagaatcatattgatgcactagcaaaaaaatccattgcacatg |
6189673 |
T |
|
| Q |
213 |
gtaggagtaagcacatagagatgaggattaattacttgatagagcaagtaagcaaataaacgctaagactagagcattgtgaagatcaagtggcagattt |
312 |
Q |
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| T |
6189672 |
gtaggagtaagcacatagagatgaggtgtaattacttgatagagcaagtaagcaaataaacgctaagactagagcattgtgaagatcaagtggcagattt |
6189573 |
T |
|
| Q |
313 |
gttgaccaaaggagttgcaatcgaagtgtttaagaaaccgagatatttttaatgggaatcgaatcattgactaacatgaattaaggtggtatgttgagaa |
412 |
Q |
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| T |
6189572 |
gttgaccaaaggagttgcaatcgaagtgtttaagaaactgagatatttttaatgggaatcgaatcattgactaacatgaattaaggtggtatgttgagaa |
6189473 |
T |
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| Q |
413 |
atgagcaattcaagttagttagagtcgatgacttgac |
449 |
Q |
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| T |
6189472 |
atgagcaattcaagttagttagagtcgatgacttgac |
6189436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 15039068 - 15039001
Alignment:
| Q |
201 |
ccattgcacatggtaggagtaagcacatagagatgaggattaattacttgatagagcaagtaagcaaa |
268 |
Q |
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| T |
15039068 |
ccattgcacatgggagaagtaagcacatagaaatgaggtttcattacttgagagagcaagtaagcaaa |
15039001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 400
Target Start/End: Original strand, 29117119 - 29117224
Alignment:
| Q |
294 |
aagatcaagtggcagatttgttgaccaa-aggagttgcaatcgaagtgtttaagaaaccgagatatttttaatgggaatcgaatcattgactaacatgaa |
392 |
Q |
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|||||||||||||| |||| || ||||| ||||||| ||| ||||||||||||||| || | || ||||||||| | |||||||||||||||||| |
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| T |
29117119 |
aagatcaagtggcaaatttattaaccaataggagttataattgaagtgtttaagaaattgaaaggctt--aatgggaattgtatcattgactaacatgaa |
29117216 |
T |
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| Q |
393 |
ttaaggtg |
400 |
Q |
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|||||||| |
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| T |
29117217 |
ttaaggtg |
29117224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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