View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14070_low_4 (Length: 411)
Name: NF14070_low_4
Description: NF14070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14070_low_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 36844624 - 36844234
Alignment:
| Q |
21 |
atcagcacctttaagtaatcaagtgccttccaagaaatctaaggcattagatgatgatgtaaatagaaaagaatttcaatctgttgcatcttcatttggt |
120 |
Q |
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| T |
36844624 |
atcagcacctttaagtaatcaagtgccttccaagaaatctaaggtattagatgatgatgtaaatagaaaagaatttcaatctgttgcatcttcatttggt |
36844525 |
T |
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| Q |
121 |
attcctaaggaacctattcagtttgatcgtcccgcaacttctagatcttctgttgtagtcacaagggaagaaactctcaaaaattgcttaacagcaacac |
220 |
Q |
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| T |
36844524 |
attcctaaggaacctattcagtttgatcgtcccgcaacttctagatcttctgttgtagtcacaagggaagaaactctcaaaaattgttcaactgcaacaa |
36844425 |
T |
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| Q |
221 |
gagtttatggaaacatcaaatcagagacatgtggatacaactgatgttatcaagaaccttactagtttcatccagaagatcttagacaaaccttaggatt |
320 |
Q |
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| T |
36844424 |
gagtttatggaaacatcaaatcggagacatgtggatacaactgatgttatcaagaaccttactagtttcatccagaagatcttagacaaaccttaggatt |
36844325 |
T |
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| Q |
321 |
attttttaattgtacgcagttattaggttttcttttgtgatgacattttttaagtataattatgattctctttttggtatccatatctctt |
411 |
Q |
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| T |
36844324 |
attttttaattgtacgtagttattaggttttcttttgtgatgacattttttaagtataattatgattctctttttggtatccatatctctt |
36844234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 105 - 411
Target Start/End: Complemental strand, 18930274 - 18929958
Alignment:
| Q |
105 |
tgcatcttcatttggtattcctaaggaacctattcagtttgatcgtcccgcaacttctagatcttctgttgtagtcacaagggaagaaactctcaaaaat |
204 |
Q |
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| T |
18930274 |
tgcatcttcatttagtattcctaaggaacctcttcagtttgatcgtcctacaacttctagaacttctgctgtagtcacaagggaagaaactctcaaaaat |
18930175 |
T |
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| Q |
205 |
tgcttaacagcaacacgagtt---------tatggaaacatcaaatcagagacatgtggatacaactgatgttatcaagaaccttactagtttcatccag |
295 |
Q |
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| T |
18930174 |
tgttcaacggcgacaagagttgatagcttttatggatacatcaaatcagagacatgcggatacaactgattttatcaagaaccttaccagtttggtccag |
18930075 |
T |
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| Q |
296 |
aagatcttagacaaaccttaggattattttttaattgtacgcagttattaggttttcttttgtgatgacatttttta-agtataattatgattctctttt |
394 |
Q |
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| T |
18930074 |
aagatcttagagaaaccttaggattattttttaattgtatgctgtttttaggttttcttttgtgatgacatcttttacagtttaattataattctctttt |
18929975 |
T |
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| Q |
395 |
tggtatccatatctctt |
411 |
Q |
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| T |
18929974 |
tgatatctatatctctt |
18929958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 18930323 - 18930273
Alignment:
| Q |
29 |
ctttaagtaatcaagtgccttccaagaaatctaaggcattagatgatgatg |
79 |
Q |
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| T |
18930323 |
ctttaagtaatcaagtgccttccaagaaatctaaggtattagacgatgatg |
18930273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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