View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14070_low_6 (Length: 342)
Name: NF14070_low_6
Description: NF14070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14070_low_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 2290293 - 2289958
Alignment:
| Q |
7 |
ctgagaagaacgtcaatgctgaggaaattaagcaaagtaatgtggaaggtgaaactgtgatagctgagaagcctacattgatggctgaaccggcgaaacg |
106 |
Q |
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| T |
2290293 |
ctgataagaacgtcaatgctgaggaaattaagcaaagtaatgtggaagctgaaactgtgatagctgagaagcctacattgatggccgaaccggcgaaacg |
2290194 |
T |
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| Q |
107 |
aattattgtgcatgctttgtctactgttgctgctgcaaaaccgcatttggaaaagcctcaagtggaagacacttctatgactgaaccggtgaaacaagtt |
206 |
Q |
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| T |
2290193 |
aattattgtgcatgctttgtctactgttgctgctgcaaaaccgcatttggaaaagcctcaagtggaagacacttctatgactgaaccggtgaaacaagtt |
2290094 |
T |
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| Q |
207 |
tctgaagaagctttgaatgcagttgtcgctgaaaaaccgcaattggaaaatcctcaagtggaagatacattgatggcagaaccaacagaaaaacttcttg |
306 |
Q |
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| T |
2290093 |
tctgaagaagctttgaatgcagttgtcgctgaaaaaccgcaattggaaaatcctcaagtggaagacacattgatggcagaaccaacagaaaaacttcttg |
2289994 |
T |
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| Q |
307 |
aggaagcttcgaatgcagctgttgctgaaaagccac |
342 |
Q |
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| T |
2289993 |
aggaagcttcggatgcagctgttgctgaaaagccac |
2289958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 337
Target Start/End: Complemental strand, 2290066 - 2289867
Alignment:
| Q |
138 |
gctgcaaaaccgcatttggaaaagcctcaagtggaagacacttctatgactgaaccggtgaaacaagtttctgaagaagctttgaatgcagttgtcgctg |
237 |
Q |
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| T |
2290066 |
gctgaaaaaccgcaattggaaaatcctcaagtggaagacacattgatggcagaaccaacagaaaaacttcttgaggaagcttcggatgcagctgttgctg |
2289967 |
T |
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| Q |
238 |
aaaaaccgcaattggaaaatcctcaagtggaagatacattgatggcagaaccaacagaaaaacttcttgaggaagcttcgaatgcagctgttgctgaaaa |
337 |
Q |
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| T |
2289966 |
aaaagccacaattggaaaagcctcaagtggaagaaatatcaatggcggaaccggcagaacaacttcttgagaaatctttggatcctgttgttgctgaaaa |
2289867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 244
Target Start/End: Complemental strand, 2289814 - 2289723
Alignment:
| Q |
153 |
ttggaaaagcctcaagtggaagacacttctatgactgaaccggtgaaacaagtttctgaagaagctttgaatgcagttgtcgctgaaaaacc |
244 |
Q |
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| T |
2289814 |
ttggaaaagcctcaagtggaagaaccatctctggcggaaccggtggaacaactttctgtggaagctttggacgctgttgttgctgaaaaacc |
2289723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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