View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14070_low_7 (Length: 325)

Name: NF14070_low_7
Description: NF14070
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14070_low_7
NF14070_low_7
[»] chr7 (2 HSPs)
chr7 (19-96)||(2720605-2720682)
chr7 (25-98)||(2698451-2698524)
[»] chr3 (1 HSPs)
chr3 (22-98)||(10839851-10839927)


Alignment Details
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 2720605 - 2720682
Alignment:
Q  19 atagcctctcatccttcaaacaaaaatgcaatatctttctttcgaacatgtcttaatggagtcaatgcaatttcaggt 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2720605 atagcctctcatccttcaaacaaaaatgcaatatctttctttcgaacatgtcttaatggagtcaatgcaatttcaggt 2720682  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 2698524 - 2698451
Alignment:
Q  25 tctcatccttcaaacaaaaatgcaatatctttctttcgaacatgtcttaatggagtcaatgcaatttcaggttt 98  Q
    ||||||||||||||||||||| || ||||||||||||  |||||| |||||||| |||||||||||||||||||    
T  2698524 tctcatccttcaaacaaaaatacagtatctttctttcatacatgtgttaatggactcaatgcaatttcaggttt 2698451  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 10839927 - 10839851
Alignment:
Q  22 gcctctcatccttcaaacaaaaatgcaatatctttctttcgaacatgtcttaatggagtcaatgcaatttcaggttt 98  Q
    ||||||||| || ||||||||| | |  ||||||||||||| |||||| |||| |||| ||||||||||||||||||    
T  10839927 gcctctcattctccaaacaaaagtactgtatctttctttcgcacatgtgttaaaggagccaatgcaatttcaggttt 10839851  T

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