View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14071_high_5 (Length: 264)
Name: NF14071_high_5
Description: NF14071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14071_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 36864567 - 36864464
Alignment:
| Q |
8 |
aatatactttgttgaatgcgttttctgtatttgaacaatcgtctaattttttatcctgtttttaactccttgtcctaattatgatttgattgttattaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36864567 |
aatatactttgttgaatgcgttttctgtatttgaacaatcgtctaattttttttcctgtttttaactccttgtcgtaattatgatttgattgttattaac |
36864468 |
T |
|
| Q |
108 |
tttg |
111 |
Q |
| |
|
|||| |
|
|
| T |
36864467 |
tttg |
36864464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 36864447 - 36864561
Alignment:
| Q |
108 |
tttgactgacaaagaccccaagttattaacaatcaaaacatctttaggacaaggagttaaaaactggataaaaaattagacgattgtacaaatccagaca |
207 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||| ||| ||| ||||||||||||||||| ||| |||||||||||||||||| ||||| |||| | |
|
|
| T |
36864447 |
tttgactgacaaagacacaaagttaataacaatcaaatcataattacgacaaggagttaaaaacaggaaaaaaaattagacgattgttcaaatacagaaa |
36864546 |
T |
|
| Q |
208 |
aagcattcaacaaag |
222 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
36864547 |
acgcattcaacaaag |
36864561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University