View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14071_low_1 (Length: 540)
Name: NF14071_low_1
Description: NF14071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14071_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 10 - 524
Target Start/End: Original strand, 52990729 - 52991245
Alignment:
| Q |
10 |
atgaaaataacagctgaaaatgttac-accaaaacaataagaccatcaaaattgactgcagacaagaaagcattgacagaaaaaataatgtccgttaacc |
108 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52990729 |
atgaaaataacagctgaaaatgttaccaccaaaacaataagaccatcaaaattgactgcagacaagaaagcattgacagaaaaaataatgtccgttaacc |
52990828 |
T |
|
| Q |
109 |
atagccagaactatgagaatcagaaacaacattagtttgattatttgatctgtatttatagttttataagtataaagtgatcatatgaaaagtttctaca |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
52990829 |
atagccagaactatgagaatcagaaacaacattagtttgattatttgatctgtatttatagttatataattataaagtgatcatatgaaaagtttctaca |
52990928 |
T |
|
| Q |
209 |
caaacatttaatcatttatcataatattgcttttttaaaacatctacacaaatatctataatgaagaaaatataattgaatgtttgtataaaacttgttt |
308 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52990929 |
caaacatttaatcatttatcataatattgc-tttttaaaacatctacacaaatatctataatgaagaaaatataattgaatgtttgcataaaacttgttt |
52991027 |
T |
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| Q |
309 |
ctacttgtcaggcatgattactaaattcttatattaattgtatgagcactgtcattctcttgatgcaggtaaaattgatcattctctcaatagcaaaatg |
408 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52991028 |
ctactagtcaggcatgattactaaattcttatattaattgtatgagcactgtcattctcttgatgcaggtaaaattgatcattctctcaatagcaaaatg |
52991127 |
T |
|
| Q |
409 |
tcattcaaaataac--ctctcttttttcttaatagcaacatgactttcaaactcaactccttttatctgttcacaaactttgtaaaactaaaaaactacc |
506 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52991128 |
tcattcaaaataacctctctcttttttcttaatagcaacatgactttcaaactcaactcctttaatctgttcacaaactttgtaaaactaaaaaactacc |
52991227 |
T |
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| Q |
507 |
ttttcaggatcatggaag |
524 |
Q |
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|||||||||||||||||| |
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| T |
52991228 |
ttttcaggatcatggaag |
52991245 |
T |
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