View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14071_low_2 (Length: 377)
Name: NF14071_low_2
Description: NF14071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14071_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 28 - 365
Target Start/End: Complemental strand, 41244419 - 41244082
Alignment:
| Q |
28 |
atatatagttagaaagggaggattatcacatacttggatttccatagccgtcagaggtggcataataagaagctcttgatttggtataatattccttgca |
127 |
Q |
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| T |
41244419 |
atatatagttagaaagggaggattatcacatacttggatttccatagccgtcagaggtgccataataggaagctctggatttggtataatattccttgca |
41244320 |
T |
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| Q |
128 |
attacatagtactggaaacaacagaataacacagacaaggctaaattgatgcttaaaactaagatccatgccttaaatatataataatgtaacacaagtt |
227 |
Q |
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| T |
41244319 |
attacatagtactggaaacaacagaataacacagacaaggctaaattgatgcttaaaactaagatccatgccttaaatatataataatgtaacacaagtt |
41244220 |
T |
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| Q |
228 |
atcaaatgtgatgatttttatttttcctgtgaaaggtaagcaattaagaagaaaatgcttttatgagatgtgaaacaacgataccaagatacaagtattt |
327 |
Q |
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| T |
41244219 |
atcaaatgtgatgatttttatttttcctgtgaaaggtaagcaattaagaagaaaatgcttttatgagatgtgaaacaacgataccaagatagaagtattt |
41244120 |
T |
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| Q |
328 |
atagtacaatcctttggtcaagatttatgcatatacca |
365 |
Q |
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| T |
41244119 |
atagtacaatcctttggtcaagatttatgcatatacca |
41244082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 41237019 - 41236898
Alignment:
| Q |
29 |
tatatagttagaaagggaggattatcacatacttggatttccatagccgtcagaggtggcataataagaagctcttgatttggtataatattccttgcaa |
128 |
Q |
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| T |
41237019 |
tatatagttagaatgggaggattatcacatacttggatttccatagccgtcagaggtggcataataagaagctcttgatttggtataatattccttgcaa |
41236920 |
T |
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| Q |
129 |
ttacatagtactggaaacaaca |
150 |
Q |
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| T |
41236919 |
ttacatagtgctgggaacaaca |
41236898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 41236758 - 41236682
Alignment:
| Q |
284 |
gcttttatgagatgtgaaacaacgataccaagatacaagtatttatagtacaatcctttggtcaagatttatgcata |
360 |
Q |
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| T |
41236758 |
gcttttatgagatgtgaagtaaagatagcaagacacaagtatttatagtacaatcattttgtctagatttatgcata |
41236682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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