View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14071_low_4 (Length: 285)
Name: NF14071_low_4
Description: NF14071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14071_low_4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 3020056 - 3019787
Alignment:
| Q |
16 |
atctcaaacctatcaggaaacatcttcatgaagaatttatcaggatccttgaggaactcaccaaactcaactgttccttctagtggaatgaactttctac |
115 |
Q |
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| T |
3020056 |
atctcaaacctatcaggaaacatcttcataaagaatttatcaggatccttgaggaactcaccaaactcaactgttccttctagtggaatgaactttctac |
3019957 |
T |
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| Q |
116 |
atagtgtaggataattaggagggtaattaccattttgtgcatgtttttggtggtttataactgcatgacgcgccgcagaaatccatatgagagttgttag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3019956 |
atagtgtaggataattaggagggtaattaccattttgtgcatgtttttggtggtttataactgcatgacgcgccgcagaaatccatatgagagttgttag |
3019857 |
T |
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| Q |
216 |
cgtttctacaaggtctgagagtgttgtcatttgataccaccatgtctcattgtggttgtcgccgtggcct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3019856 |
cgtttctacaaggtctgagagtgttgtcatttgataccaccatgtctcattgtggttgtcgccgtggcct |
3019787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 18363889 - 18363620
Alignment:
| Q |
16 |
atctcaaacctatcaggaaacatcttcatgaagaatttatcaggatccttgaggaactcaccaaactcaactgttccttctagtggaatgaactttctac |
115 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18363889 |
atctcaaacctatcaggaaacatcttcataaagaatttatcaggatccttgaggaactcaccaaactcaactgttccttctagtggaatgaactttctac |
18363790 |
T |
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| Q |
116 |
atagtgtaggataattaggagggtaattaccattttgtgcatgtttttggtggtttataactgcatgacgcgccgcagaaatccatatgagagttgttag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18363789 |
atagtgtaggataattaggagggtaattaccattttgtgcatgtttttggtgttttataactgcatgacgcgccgcagaaatccatatgagagttgttag |
18363690 |
T |
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| Q |
216 |
cgtttctacaaggtctgagagtgttgtcatttgataccaccatgtctcattgtggttgtcgccgtggcct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18363689 |
cgtttctacaaggtctgagagtgttgtcatttgataccaccatgtctcattgtggttgtcgccgtggcct |
18363620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 18369201 - 18369127
Alignment:
| Q |
16 |
atctcaaacctatcaggaaacatcttcatgaagaatttatcaggatccttgaggaactcaccaaactcaactgtt |
90 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18369201 |
atctcaaacctatcaggaaacatcttcatgaagaatttatcaggatccttgaggaactcaccaaactcaactgtt |
18369127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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