View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14071_low_5 (Length: 277)
Name: NF14071_low_5
Description: NF14071
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14071_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 124 - 263
Target Start/End: Original strand, 11827721 - 11827860
Alignment:
| Q |
124 |
catgaagcaacgcaaatataagaagcaaggaataaagaaaatactagtgtactactccctcctcttttccattttcaataacatttatggtagaattgaa |
223 |
Q |
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| T |
11827721 |
catgaagcaacgcaaatataagaagcaaggaataaagaaaatactagtgtactactccctcctcttttccattttcaataacatttatggtagaattgaa |
11827820 |
T |
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| Q |
224 |
tacactaccaatatatgatggatcattctctctttcatct |
263 |
Q |
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| T |
11827821 |
tacactaccaatatatgatggatcattctctctttcatct |
11827860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 11827617 - 11827655
Alignment:
| Q |
20 |
ccctcatcacgatcagaaatggcttgattttgcttgcgt |
58 |
Q |
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| T |
11827617 |
ccctcatcacgatcagaaacggcttgattttgcttgcgt |
11827655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 47344657 - 47344596
Alignment:
| Q |
124 |
catgaagcaacgcaaatataagaagcaaggaataaagaaaatactagtgtactactccctcc |
185 |
Q |
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| T |
47344657 |
catgaagcatggcaaatacaagaagcaaggaataaagaaaatattagtgtcccactccctcc |
47344596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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