View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14072_high_1 (Length: 614)

Name: NF14072_high_1
Description: NF14072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14072_high_1
NF14072_high_1
[»] chr2 (1 HSPs)
chr2 (19-614)||(4960426-4961023)


Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 19 - 614
Target Start/End: Original strand, 4960426 - 4961023
Alignment:
Q  19 attttgttcattatgaaatatttaattaatctattatttgtccacttcttcttgtccttgccatcattcttggtaacttggggggcatgaaatgcttgtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4960426 attttgttcattatgaaatatttaattaatctattatttgtccacttcttcttgtccttgccatcattcttggtaacttggggggcatgaaatgcttgtt 4960525  T
Q  119 aaactagcattcttccacctctttcaattacaagaagtccatgagcctctaatgaactctgtcgttcttctgtcattatggcattaatgtgttctggttc 218  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  4960526 aaactagcattcttgcacctctttcaattacaagaagtccatgagcctctaatgaactctatcgttcttcggtcattatggcattaatgtgttctggttc 4960625  T
Q  219 ctcaatagccactactatgaaatcaaattaaggtgtccgagttctcattaccttttccaccacttgttgatgagtgatttcttcttcccacattttcatt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4960626 ctcaatagccactactatgaaatcaaattaaggtgtccgagttctcattaccttttccaccacttgttgatgagtgatttcttcttcccatattttcatt 4960725  T
Q  319 tgattgaccaatgcgataaattttggaaagtggtctgcaatctttttatcttctttcatgtgcaaca-acccatag--ttttttcttaaaaactaaagtt 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||||    
T  4960726 tgattgaccaatgcgataaattttggaaagtggtctgcaatctttttatcttctttcatgtgcaacactcccatagttttttttcttaaaaactaaagtt 4960825  T
Q  416 ttaccttcttaactttgtcttcatcatcatgatacttcactagtatatctcatgcctcttttcatcctgtcaccttagagattttctcaaaatgatataa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4960826 ttaccttcttaactttgtcttcatcatcatgatacttcactagtatatctcatgcctcttttcatcctgtcaccttagagattttctcaaaatgatataa 4960925  T
Q  516 atccatattttgttaaatgtagaacaaacatttgcaatcnnnnnnnatttgactctttgaatgttgctctttgtgcatcaattggattcacacccaatt 614  Q
    ||||||||||||||||||||||||||||||||||||||        |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4960926 atccatattttgttaaatgtagaacaaacatttgcaat-tttttttatttcactctttgaatgttgctctttgtgcatcaattggattcacacccaatt 4961023  T

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