View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14072_high_4 (Length: 458)
Name: NF14072_high_4
Description: NF14072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14072_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 14 - 441
Target Start/End: Complemental strand, 52762168 - 52761742
Alignment:
| Q |
14 |
cagaacctgtgcaacttgttcaattgatcattccaattgaatcagctcagcgatccatctcttaccttggcgatctcggcctttttcaattcaaagatgt |
113 |
Q |
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| T |
52762168 |
cagaacctatgcaacttgttcaattgatcattccaattgaatcagctcagcgatccatctcttaccttggcgatctcggcctttttcaattcaaagatgt |
52762069 |
T |
|
| Q |
114 |
atgaatcctttaattaccaatctttgtcctttctcactttgcattcttgatgacgcttcggactacattttccataatgttgagatgttcttcatctatc |
213 |
Q |
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| T |
52762068 |
atgaatcctttaattaccaatctttgtcctt-ctcactttgtattctttatgacgcttcggactacattttccataatgttgagatgttcttcatctatc |
52761970 |
T |
|
| Q |
214 |
tgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacctacgcttcac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761969 |
tgaattagcattatttatatactacattgataaatcttgtttaaatcaattcttcagcttaatgaagataaaagcccattccaacagacctacgcttcac |
52761870 |
T |
|
| Q |
314 |
aggtacctataacatctatgtatgcatttaaaaaggttgagactcctcaatttcaaatgattgtgtattgaactccaaaacaattaaatgcttcttttga |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761869 |
aggtacctataacatctatgtatgcatttaaaaaggttgagactcttcaatttcaaatgattgtgtattgaactccaaaacaattaaatgcttcttttga |
52761770 |
T |
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| Q |
414 |
ttttcatttggaaatttgaccaaaatct |
441 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
52761769 |
ttttcatttggaaatttgaccaagatct |
52761742 |
T |
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