View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14072_low_1 (Length: 1130)
Name: NF14072_low_1
Description: NF14072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14072_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 960; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 960; E-Value: 0
Query Start/End: Original strand, 12 - 1113
Target Start/End: Complemental strand, 31008761 - 31007669
Alignment:
| Q |
12 |
gaagaatataggtagaagaagaagaggagaaggtaaatatgagggtgatagatagaactttgagatggcctaattagcttaggaaaaggtgatatggctt |
111 |
Q |
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| T |
31008761 |
gaagaatataggtagaagaagaagaggagaaggtaaatatgagggtgatagatagaactttgagatggcctaattagcttaggaaaaggtgatatggctt |
31008662 |
T |
|
| Q |
112 |
agtggagaggcaacttatcaaagtgcgctaccacattcttctatgtgtaaaagtcaaacaaatagcctatgacttgtttggtatgtttctaaaaatgatg |
211 |
Q |
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| T |
31008661 |
agtggagaggcaacttatcaaagtgcgctaccacattcttctatgtgtaaaagtcaaacaaatagcctatgacttgtttggtatgtttctaaaaatgatg |
31008562 |
T |
|
| Q |
212 |
ttgacttttaagatggacacaaaaaggagtagtttattttactattaaattttgattttgcaaccatatatatctgcatatcaagtatggtttctttcta |
311 |
Q |
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| T |
31008561 |
ttgacttttaagatggacacaaaaaggagtagtttattttactattaaattttgattttgcaaccatatatatctgcatatcaagtatggtttctttcta |
31008462 |
T |
|
| Q |
312 |
ggtttccaaacaccatctaatttaattttatataacttattagtccattttctcttatttcccttacaattcaccttatttaactttgtcttaatgtcat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31008461 |
ggtttccaaacaccatctaatttaattttatataacttattagtccattttctcttatttcccttacaattcaccttatttaactttgtcttaatgtcat |
31008362 |
T |
|
| Q |
412 |
aaaataaaaattgaaaaatactagtcatagaacactatataagcaaagtttggttttgtcnnnnnnnntaaagcaatgtttggaatgagtcttttggcaa |
511 |
Q |
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||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31008361 |
aaaataa--------aaatactagtcatagaacactatagaagcaaagtttggttttgtcaaaaaaaataaagcaatgtttggaatgagtcttttggcaa |
31008270 |
T |
|
| Q |
512 |
ttacataaacaactcatgtcatgtgctgtataacttctggtccaaaacaaatgacttaatcatcaaattgataattataaattcgaatatttccacctac |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31008269 |
ttacataaacaactcatgtcatgtgctgtataacttctggtccaaaacaaatgacttaatcatcaaattgataattataaattcgaatatttccacctac |
31008170 |
T |
|
| Q |
612 |
cattttgtttttaatatacttttggttaggaaatagatgaacaagtctactatctaccctttgttctcacacgcatgagatatgctccatttgcatttag |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31008169 |
cattttgtttttaatatacttttggttaggaaatagatgaacaagtctactatctaccctttgttctcacacgcatgagatatgctccatttccatttag |
31008070 |
T |
|
| Q |
712 |
tgtcaaagttattcaactcttcttcaatagtttatgtctagaatattactctaatcaatccaactattaggtgaannnnnnnnattaaataaaccaaaac |
811 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31008069 |
tgtcaaagttattcaactcttcttcaatagtttatgtctagaatattactctaatcaatccaactattaggtgaattttttttattaaataaaccaaaac |
31007970 |
T |
|
| Q |
812 |
tacaaaatttcagaaattttgaagatactactactannnnnnnnnnnnnnnnatactactatttggtaactcattgtaataattagatgtcaaataaaca |
911 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31007969 |
tacaaaatttcagaaattttgaagatactactacta-tttttttttttttttatactactatttggtaactcattgtaataattagatgtcaaataaaga |
31007871 |
T |
|
| Q |
912 |
aactcatcatattaattaaatatctacaacgaaattatatacttaataatatcttgaatatttaaattattgcatgcataactcgcacacctttagacat |
1011 |
Q |
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| T |
31007870 |
aactcatcatattaattaaatatctacaacgaaattatatacttaataatatcttgaatatttaaattattgcatgcataactcgcacacctttagacat |
31007771 |
T |
|
| Q |
1012 |
ggtaaaactttggatatagtgatggatcaagttcaaaactataaatttttcatatgatttatatcaatattcaatcatttaaacgtcaaaaagtaagttt |
1111 |
Q |
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| T |
31007770 |
ggtaaaactttggatatagtgatggatcaagttcaaaactataaatttttcatatgatttatatcaatattcaatcatttaaacgtcaaaaagtaagttt |
31007671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 343 - 448
Target Start/End: Complemental strand, 30940817 - 30940712
Alignment:
| Q |
343 |
ataacttattagtccattttctcttatttcccttacaattcaccttatttaactttgtcttaatgtcataaaataaaaattgaaaaatactagtcataga |
442 |
Q |
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||||||||||| ||| |||||||||| | | ||||||||| |||| | | |||||||||||||||||||||| || | ||||||||||||||||||| |
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| T |
30940817 |
ataacttattaatcccttttctcttagtgctgctacaattcatcttaacttagtttgtcttaatgtcataaaatagaattggaaaaatactagtcataga |
30940718 |
T |
|
| Q |
443 |
acacta |
448 |
Q |
| |
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|||||| |
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| T |
30940717 |
acacta |
30940712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 494 - 537
Target Start/End: Complemental strand, 30940696 - 30940653
Alignment:
| Q |
494 |
gaatgagtcttttggcaattacataaacaactcatgtcatgtgc |
537 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30940696 |
gaatgagtcttttggcaattacataaacaactcatgtgatgtgc |
30940653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 30976600 - 30976544
Alignment:
| Q |
179 |
tatgacttgtttggtatgtttctaaaaatgatgttgacttttaagatggacacaaaa |
235 |
Q |
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| T |
30976600 |
tatgacttgtttggtatctttgtaaaattggtgttgacttttaagatggacaaaaaa |
30976544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 30983039 - 30982983
Alignment:
| Q |
179 |
tatgacttgtttggtatgtttctaaaaatgatgttgacttttaagatggacacaaaa |
235 |
Q |
| |
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||||||||||||||||| ||| ||||| || ||||||||||||||||||||| |||| |
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| T |
30983039 |
tatgacttgtttggtatctttgtaaaattggtgttgacttttaagatggacaaaaaa |
30982983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 30989203 - 30989147
Alignment:
| Q |
179 |
tatgacttgtttggtatgtttctaaaaatgatgttgacttttaagatggacacaaaa |
235 |
Q |
| |
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||||||||||||||||| ||| ||||| || ||||||||||||||||||||| |||| |
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| T |
30989203 |
tatgacttgtttggtatctttgtaaaattggtgttgacttttaagatggacaaaaaa |
30989147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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