View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14072_low_10 (Length: 331)
Name: NF14072_low_10
Description: NF14072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14072_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 1316588 - 1316283
Alignment:
| Q |
10 |
aagaatatgagacaaactcaagtcttctaaaatattgtccttaaaccatttctttatgctaaaggtgaagttagtatcatatttcttcaataacttgttg |
109 |
Q |
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| T |
1316588 |
aagaaaatgagacaaactcaagtcttctaaaatattgtccttaaaccatttctttatgctaaaggtgaagttagtatgatatttcttcaataacttgttg |
1316489 |
T |
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| Q |
110 |
atcttagctacctttttacttaaaagtcaagagtttctgttatctattaggtaagactatattgattttgacccaataaagaaggcaaattgtattgatt |
209 |
Q |
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| T |
1316488 |
atcttagctacctttttacttaaaagtcaagagtttctgttatctattaggtaagactatattgattttgacccaataaagaaggcaaattgtattgatt |
1316389 |
T |
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| Q |
210 |
cttaaattgttccacactttcgatctaacatacaaggaatccatttattaatagtgtcaatagtcaactatcatcaagtgaaactagaattattatttga |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1316388 |
cttaaattgttccacactttcgatctaacatacaaggaatccatttattaatagtgtcaatagtcaactatcatcaagtgaaactagaattattatttga |
1316289 |
T |
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| Q |
310 |
gaaaat |
315 |
Q |
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|||||| |
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| T |
1316288 |
gaaaat |
1316283 |
T |
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