View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14072_low_3 (Length: 539)
Name: NF14072_low_3
Description: NF14072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14072_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 3 - 521
Target Start/End: Complemental strand, 1767860 - 1767342
Alignment:
| Q |
3 |
taggagaagagtgggctcaattttggacaaacaaaatttcatcgttaacgggccagacaaggctccgatcctctcgtctgacggacttgatttgttagca |
102 |
Q |
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| T |
1767860 |
taggagaagagtgggctcaattttggacaaacaaaatttcatcgttaacgggccagacaaagctccgatcctctcgtctaacggacttgatttgttagca |
1767761 |
T |
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| Q |
103 |
tccagaatgtaccaattatcaccatctcaagtaaatagttttatcaattggacaaaatagaaaaatcaaattcatattatgtattttgatttgattttta |
202 |
Q |
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| T |
1767760 |
tccagaatgtaccaattatcaccatctcaagtaaatagttttatcaattggacaaaatagaaaaatcaaactcatattatgtattttgatttgattttta |
1767661 |
T |
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| Q |
203 |
gctaatgtttatgtaatctataatgtaaatatgatttatattgattattattaatacttaattaaagcaaattcgatttctatatgcaggatttgacact |
302 |
Q |
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| T |
1767660 |
gctaatgtttatgtaatctataatgtaaatatgatttatattgattattattaatacttaattaaggcaaattcaatttctatatgcaggatttgacact |
1767561 |
T |
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| Q |
303 |
tgctttatctctagtgagacctttacctccctttttgagcgatgctgatttattgatgaaacaaacaactgttacaaatgaaaacaatggaatggtgcct |
402 |
Q |
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| T |
1767560 |
tgctttatctctagtgagacctttacctccctttttgagcgatgctgatttattgatgaaacaaacaactgttacaaatgaaaacaatggaatggtgcct |
1767461 |
T |
|
| Q |
403 |
aaaatcttcatcatctctgaaaatgacaatttgcaaacaaaggattttcaagagtggataattgagacaacaggtccatatgctaaagtgaaaatgattg |
502 |
Q |
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| T |
1767460 |
aaaatcttcatcatctctgaaaatgacaatttgcaaacaaaggattttcaagagtggataattgagacaacaggtccatatgctaaagtgaaaatgattg |
1767361 |
T |
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| Q |
503 |
agggttcagatcatatggt |
521 |
Q |
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| T |
1767360 |
agggttcagatcatatggt |
1767342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 522
Target Start/End: Complemental strand, 1776293 - 1776228
Alignment:
| Q |
457 |
tggataattgagacaacaggtccatatgctaaagtgaaaatgattgagggttcagatcatatggtt |
522 |
Q |
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| T |
1776293 |
tggataattgagagaactggtccatatgttgaagtgaaagtgataaaggattcagatcacatggtt |
1776228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 457 - 521
Target Start/End: Complemental strand, 1782719 - 1782655
Alignment:
| Q |
457 |
tggataattgagacaacaggtccatatgctaaagtgaaaatgattgagggttcagatcatatggt |
521 |
Q |
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| T |
1782719 |
tggataattgagagaactggtccatatgttgaagtgaaagtgataaaggattcagatcacatggt |
1782655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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