View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14072_low_4 (Length: 480)
Name: NF14072_low_4
Description: NF14072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14072_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 30469987 - 30470446
Alignment:
| Q |
1 |
tggccatattggttttgtttacttttacaagttggaaattggcaannnnnnnnctgaaacggcatatatattatacgggttccccgcacaagacgaacaa |
100 |
Q |
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| T |
30469987 |
tggccatattggttttgtttacttttacaagttggaaattggcaattttttt-ctgaaacggcatatatattatacgggttccccgcacaagacgaaaaa |
30470085 |
T |
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| Q |
101 |
ggtaacaaacagaaaaaatacaatggtgctggatttaagtggaaccaaactaacacacccccaaaaaagtgtcagagaaaaaacatctgatacatc---- |
196 |
Q |
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| T |
30470086 |
ggtaacaaacagaaaaaatacaatggtgccagatttaagtggaaccaaactaacacacccccaaaaaagtgtcggagaaaaaacatctgatacaccgtac |
30470185 |
T |
|
| Q |
197 |
--------ttacaattaagaacacacctttgcaaaatttcctttgattagcctcctccgacaa---acacaccaagggcacaaataaattcggtggagta |
285 |
Q |
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| T |
30470186 |
aaagcaggttacaattaagaacacacctttgcgaaatttcctttgattagcctcctccgacaacaaacacaccaagggcacaaataaattcggtggagta |
30470285 |
T |
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| Q |
286 |
ataaaattaaacttgaaccacctcaacaccttttgccacaccttgtcttgtccaccacattacaatgaagaaaaagatggttatactaatatgtctcttc |
385 |
Q |
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| T |
30470286 |
ataaaattaaacttgaaccacctcaacaccttttgtcacaccttgtcttgtccaccacattacaatgaagaaaaagatggtt------atatgtctcttc |
30470379 |
T |
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| Q |
386 |
acccaaatcgcagaaaacacaattgaggacagagttcttgtccaacacattgcgaatcacaaggttt |
452 |
Q |
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| T |
30470380 |
acccaaatcgcagaaaacacaattgaggacagagttcttgtccaacacattacgaatcacaaggttt |
30470446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 451
Target Start/End: Original strand, 3085570 - 3085703
Alignment:
| Q |
307 |
ctcaacaccttttgccacaccttgtcttgtccaccacattacaatgaagaaaaagatggttatactaatatgtctcttcacccaaatcgcagaaaacaca |
406 |
Q |
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| T |
3085570 |
ctcaataccttttgccacaccttgtca-----accacattacaatgaagaaagatatcgttaga------tgtttcttcatccaaatcgcacaaaacaca |
3085658 |
T |
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| Q |
407 |
attgaggacagagttcttgtccaacacattgcgaatcacaaggtt |
451 |
Q |
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| T |
3085659 |
attaaggttagagttccggtccaacacattacgaattacaaggtt |
3085703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 3084940 - 3085012
Alignment:
| Q |
57 |
aaacggcatatatattatacgggttccccgcacaagacgaacaaggtaacaaacagaaaaaatacaatggtgc |
129 |
Q |
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| T |
3084940 |
aaacggcatatatattatacgggtaccttgcacaagacggacaaggaaaacaacatcaaaaacacaatggtgc |
3085012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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