View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14073_high_1 (Length: 486)
Name: NF14073_high_1
Description: NF14073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14073_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 39679436 - 39679895
Alignment:
| Q |
11 |
gaacctgtgcaacaagcaaaacaagaagcatcaagaaggaaaaagatgtcaagagcacaagattcagtactcaaatacatggcaaagatcatggatgtat |
110 |
Q |
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| T |
39679436 |
gaacctgagcaacaagcaaaacaagaagcatcaagaaggaaaaagatgtcaagagcacaagattcagtactcaaatacatggcaaagatcatggatgtat |
39679535 |
T |
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| Q |
111 |
gcaaagccaaaggttttgtctatggaatcatccctgaaaagggtaaaccggtatcaggttcgtctgatagtttacgcgaatggtggaaagatcaaatccg |
210 |
Q |
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| T |
39679536 |
gcaaagccaaaggttttgtctatggaatcatccctgaaaagggtaaaccggtatcaggttcgtctgatagtttacgcgaatggtggaaagatcaaatccg |
39679635 |
T |
|
| Q |
211 |
ttttgatcaaagtgcgccactcgcggttgcaaaatacttaccactccttcgagaagacgaacattttaatactataatggctgacccaaattcttacata |
310 |
Q |
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| T |
39679636 |
ttttgatcaaagcgcgccactcgcggttgcaaaatacttaccactccttcgagaagacgaacattttaatactataatggctgacccaaattcttacata |
39679735 |
T |
|
| Q |
311 |
catctcctccaagatttacaagattcaactcttggttcgcttctttctgctttaatgcaacattgtgtgccaccacagaggaggtttccactcgagaggg |
410 |
Q |
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| T |
39679736 |
catctcctccaagatttacaagattcaactcttggttcgcttctttctgctttaatgcaacattgtgtgccaccacagaggaggtttccactcgagaggg |
39679835 |
T |
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| Q |
411 |
gaatttctcctccctggtggcccacaggatcagaaaattggtggggtgaacaaggtttgt |
470 |
Q |
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| T |
39679836 |
gaatttctcctccctggtggcccacaggatcagaaaattggtggggtgaacaaggtttgt |
39679895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 38051988 - 38052169
Alignment:
| Q |
20 |
caacaagcaaaacaagaagcatcaagaaggaaaaagatgtcaagagcacaagattcagtactcaaatacatggcaaagatcatggatgtatgcaaagcca |
119 |
Q |
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|||||||||||| | || ||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||| |||||||||| |
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| T |
38051988 |
caacaagcaaaagatgaggcatcaagaaggaaaaagatgtcaagagcacaagattcaattctcaaatacatgatgaagattatgacaatatgcaaagctc |
38052087 |
T |
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| Q |
120 |
aaggttttgtctatggaatcatccctgaaaagggtaaaccggtatcaggttcgtctgatagtttacgcgaatggtggaaaga |
201 |
Q |
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| T |
38052088 |
aaggttttgtctatggtattgttccagagaaaggaaaaccagtaacaggttcttcagaaagcttgcgtgaatggtggaaaga |
38052169 |
T |
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