View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14073_low_3 (Length: 472)
Name: NF14073_low_3
Description: NF14073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14073_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 10 - 458
Target Start/End: Complemental strand, 3961889 - 3961435
Alignment:
| Q |
10 |
attatacttaagaagctccaaaaagaagaatatcctataagattagaactctagatcactatttgcctcttcccccttgtatatcagaatgtggcaggca |
109 |
Q |
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| T |
3961889 |
attatacttaagaagctccaaaaagaagaatatcctataagattagaactctagatcactatttgcctcttcccccttgtatatcagaatatggcaggca |
3961790 |
T |
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| Q |
110 |
gagggtaatccgaaagagaaagcttttactcaattgaggatagcggaaagtagcgattttttcaaatataattttgtactatatagcacatcatggaaca |
209 |
Q |
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| T |
3961789 |
gagggtaatccgaaagagaaagcttttactcaattgaggatagcggaaagtagcgattttttcaaatataattttgtactatatagcacatcatgaaaca |
3961690 |
T |
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| Q |
210 |
atagcagtttgttgaaattccactattcaatggcgtcatagcaccgctatttaacgacactgattaaaaatcatttcacttagtttttgattcaatctga |
309 |
Q |
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| T |
3961689 |
atagcagttttttgaaattccactattcaatggcgtcatagcaccgctatgacacgacactgattaaaattcatttcacttaatttttgattcaatctga |
3961590 |
T |
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| Q |
310 |
tatgatgaattatagatcatgtcaaattaacatatttaaccaagataaactccatatggatctcttgtaaggaaaaatattttgaattaagccttcatc- |
408 |
Q |
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| T |
3961589 |
tatgatgaattatcaatcatgtcaaattaacatatttaaccaagataaactccatatggatctctagtaaggacaaatattttaaattaagccttcatct |
3961490 |
T |
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| Q |
409 |
-----aaatttgttgactagtcatgatagataatgaacagtgtgtacaaacaagt |
458 |
Q |
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| T |
3961489 |
tggctaaatttgttgactagtcatgatagataatgaacagtgtttacaaacaagt |
3961435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 53768223 - 53768262
Alignment:
| Q |
183 |
ttgtactatatagcacatcatggaacaatagcagtttgtt |
222 |
Q |
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| T |
53768223 |
ttgtactatatagcagatcatggaacaatagcggtttgtt |
53768262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 28976431 - 28976486
Alignment:
| Q |
180 |
attttgtactatatagcacatcatggaacaatagcagtttgttgaaattccactat |
235 |
Q |
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| T |
28976431 |
attttgtactaaatagtgtatcatggaaaaatagcagtttgtttaaattccactat |
28976486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 228
Target Start/End: Original strand, 41015018 - 41015064
Alignment:
| Q |
182 |
tttgtactatatagcacatcatggaacaatagcagtttgttgaaatt |
228 |
Q |
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| T |
41015018 |
tttgtactaaatagcatatcacggaacaatagcagtttgttcaaatt |
41015064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 235
Target Start/End: Complemental strand, 7889176 - 7889140
Alignment:
| Q |
199 |
atcatggaacaatagcagtttgttgaaattccactat |
235 |
Q |
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| T |
7889176 |
atcacggaacaatagcagtttgttgaaattccgctat |
7889140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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