View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14073_low_4 (Length: 467)
Name: NF14073_low_4
Description: NF14073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14073_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 218 - 450
Target Start/End: Original strand, 14130247 - 14130479
Alignment:
| Q |
218 |
aacaacaaattgagaaatcagattgagactgattttgatcagcaattcataactttcctggtgacaaatttacacctgacccatctgaagaaaacaacaa |
317 |
Q |
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| T |
14130247 |
aacaacaaattgagaaatcagattgagacggattttgatcaccaattcataactttttttatgacaactttacacatgacccatctgaagaaaacaacaa |
14130346 |
T |
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| Q |
318 |
ggaattatttgatgacacatatgccataaatagtgtaatatggttgaatcttgaacaagtatttggttgatggcaatagcaaaatcactatgagtagtac |
417 |
Q |
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| T |
14130347 |
ggaattatttgatgacccacatgccacaaatagtgtaatatggttgaatcttgaacaagtatttggttaatggcaatagcaaaatcactatgagtagtac |
14130446 |
T |
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| Q |
418 |
ttgagagtgaacacagaccataactgtctctac |
450 |
Q |
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| T |
14130447 |
ttgagagttaacacagaccataactgtctctac |
14130479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 14130147 - 14130230
Alignment:
| Q |
82 |
tatataagaattattagaaaaattctaactatacttgaaaaaattcatataaaatttattttccatggtgtaatcttgaccaca |
165 |
Q |
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| T |
14130147 |
tatataagaattattagaaaaattctaactatacttgaaaaaattcatataaaatttattttccatggtgcaatcttgaccaca |
14130230 |
T |
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