View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14073_low_5 (Length: 457)
Name: NF14073_low_5
Description: NF14073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14073_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 23 - 441
Target Start/End: Original strand, 45647767 - 45648182
Alignment:
| Q |
23 |
tgcaccattggtggaaaagtgttttacacttaaaaacaaattagaacccaccgacataacaaataattgtgtaacttccnnnnnnnnaaaaccgtcaaac |
122 |
Q |
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| T |
45647767 |
tgcaccgttggtggaaaagtgttttacacttaaaaacaaattagaacccaccgacataacaaataattgtgtaacttccttttttt--aaaccgtcaaac |
45647864 |
T |
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| Q |
123 |
atgattcgcaagattgaagatttgtgattggttcattggatgtcagtgtaaaataactttacagttacggtgcatattccattaatctcataacttacat |
222 |
Q |
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| T |
45647865 |
atgattcgcaagattgaagatttgtgattggttcattggatgtcagtgtaaaataactttacagttacggtgcatattccattaatctcataacttacat |
45647964 |
T |
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| Q |
223 |
tgaaccacctttttatgcatattttgtcggataagttgcttgtatttttatttttgaaaagagaatgcggcattctagttattagtactccttcaaaatg |
322 |
Q |
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| T |
45647965 |
tgaaccacctttttatgcatattttgtaggataagttgcttgtatttttatttttgaaaagagaatgcggcattctagttattagtactccttcaaaatg |
45648064 |
T |
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| Q |
323 |
gagagtacaatgtgaattgcctaagtaaactaatattgtcccttgttgcaggtgcccacggctcaaacgacttgttctgccggcttggaacagaattaaa |
422 |
Q |
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| T |
45648065 |
gagagtacaatgtgaattgcctaagt-aactaatcttgtcccttgttgcaggtgcccacggctcaaacgccttgttctgccggcttggaacagaattaaa |
45648163 |
T |
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| Q |
423 |
agtacaggaatgtgcaagg |
441 |
Q |
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| T |
45648164 |
agtacaggaatgtgcaagg |
45648182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 110 - 441
Target Start/End: Original strand, 45642830 - 45643163
Alignment:
| Q |
110 |
aaaaccgtcaaacatgattcgcaagattgaagatttgtgattggttcattggatgtcagtgtaaaataactttacagttacggtgcatattccattaatc |
209 |
Q |
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| T |
45642830 |
aaaaccatcaaacatgattcgctagattgaagaattgtaatcggttcattggatgtcagtataaaataactttactcttacaatgcatattcaattaatt |
45642929 |
T |
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| Q |
210 |
tcataacttacattgaaccacctttttat-gcatattttgtcggataagttgcttgtatttttatttttgaaaagagaatgcggca-----ttctagtta |
303 |
Q |
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| T |
45642930 |
tcctaacttgaattgaaccaccttttcataagatgtttggtaggataagttgcttgtatttttatttttgaaaagagaatgcggcactccttgctagtta |
45643029 |
T |
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| Q |
304 |
ttagtactccttcaaaatggagagtacaatgtgaattgcctaagtaaactaatattgtcccttgttgcaggtgcccacggctcaaacgacttgttctgcc |
403 |
Q |
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| T |
45643030 |
ttaaca---cttccaaatggagattgcaacgtggattacttaaat-aactaatctcgccccttgttgtaggtgcccacatctcaaacgactggttctgcc |
45643125 |
T |
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| Q |
404 |
ggcttggaacagaattaaaagtacaggaatgtgcaagg |
441 |
Q |
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| T |
45643126 |
ggcttggaacagaattaaaagaacaggaatgtgcaagg |
45643163 |
T |
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