View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14073_low_6 (Length: 438)

Name: NF14073_low_6
Description: NF14073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14073_low_6
NF14073_low_6
[»] chr2 (4 HSPs)
chr2 (1-134)||(42898609-42898742)
chr2 (307-431)||(42898298-42898422)
chr2 (194-236)||(42898504-42898546)
chr2 (365-431)||(40040789-40040855)
[»] chr8 (2 HSPs)
chr8 (307-431)||(5788725-5788849)
chr8 (362-423)||(33186743-33186804)
[»] chr1 (8 HSPs)
chr1 (314-423)||(36989348-36989457)
chr1 (307-431)||(28496108-28496232)
chr1 (311-431)||(42287117-42287237)
chr1 (307-423)||(12804513-12804629)
chr1 (311-431)||(50788825-50788945)
chr1 (311-420)||(12774948-12775057)
chr1 (307-431)||(4160377-4160501)
chr1 (317-420)||(31644070-31644173)
[»] chr4 (2 HSPs)
chr4 (307-424)||(30518150-30518267)
chr4 (365-431)||(22085566-22085632)
[»] chr7 (2 HSPs)
chr7 (319-431)||(44150814-44150926)
chr7 (307-429)||(40749392-40749514)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 42898742 - 42898609
Alignment:
Q  1 tccggtgttagcgtgattttgttgaaactccgaagcataacttttgtcaaaaatattacaatgtgattctaaatgattctgataaattcaccatcaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898742 tccggtgttagcgtgattttgttgaaactccgaagcataacttttgtcaaaaatattacaatgtgattctaaatgattctgataaattcaccatcaatct 42898643  T
Q  101 aagcatgcactaacaactagagagatagtacatt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  42898642 aagcatgcactaacaactagagagatagtacatt 42898609  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 307 - 431
Target Start/End: Complemental strand, 42898422 - 42898298
Alignment:
Q  307 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42898422 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcac 42898323  T
Q  407 ttgtcacatttccacttcatctcac 431  Q
    |||||||||||||||||| ||||||    
T  42898322 ttgtcacatttccacttcttctcac 42898298  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 42898546 - 42898504
Alignment:
Q  194 atctagctaggtacctgctcctatatcaatatatatcaatgta 236  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  42898546 atctagctaggtacctgctcctagatcaatatatatcaatgta 42898504  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 40040855 - 40040789
Alignment:
Q  365 tgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcatctcac 431  Q
    ||||| ||||| || |||||||||||||| |||||||| ||||| ||||| ||||||||| ||||||    
T  40040855 tgagccttccaatcagattgaactgcatatttcttagaacacttatcacacttccacttcttctcac 40040789  T

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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 307 - 431
Target Start/End: Original strand, 5788725 - 5788849
Alignment:
Q  307 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcac 406  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| || |||||||| ||||| ||||| || |||    
T  5788725 ccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaacac 5788824  T
Q  407 ttgtcacatttccacttcatctcac 431  Q
    || ||||||||||||||| ||||||    
T  5788825 ttttcacatttccacttcttctcac 5788849  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 423
Target Start/End: Complemental strand, 33186804 - 33186743
Alignment:
Q  362 gagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccactt 423  Q
    |||||||||||||| || |||||||| ||||| |||||||| || || ||||||||||||||    
T  33186804 gagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactt 33186743  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 314 - 423
Target Start/End: Complemental strand, 36989457 - 36989348
Alignment:
Q  314 aagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcac 413  Q
    |||| |||||||||||||||| ||||||| ||||| |||||  ||||||| ||||||||||| || |||||||| ||||| |||||||| ||||| ||||    
T  36989457 aagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaacacttatcac 36989358  T
Q  414 atttccactt 423  Q
    ||||||||||    
T  36989357 atttccactt 36989348  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 431
Target Start/End: Original strand, 28496108 - 28496232
Alignment:
Q  307 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcac 406  Q
    ||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |  ||||||||||| || ||||| |||||||| || || || ||     
T  28496108 ccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacat 28496207  T
Q  407 ttgtcacatttccacttcatctcac 431  Q
    || ||||||||||||||| ||||||    
T  28496208 ttttcacatttccacttcttctcac 28496232  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 431
Target Start/End: Complemental strand, 42287237 - 42287117
Alignment:
Q  311 gagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgt 410  Q
    ||||||||||| ||||| |||||||| |||||||| || ||||| || || || || ||||||||||| |||||||| ||||| ||||| ||||| || |    
T  42287237 gagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagcattttt 42287138  T
Q  411 cacatttccacttcatctcac 431  Q
    |||||||||||||| ||||||    
T  42287137 cacatttccacttcttctcac 42287117  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 423
Target Start/End: Original strand, 12804513 - 12804629
Alignment:
Q  307 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcac 406  Q
    |||||||||||| || |||||||||||||| || || || || ||||| || || || ||||||||||| || |||||||| ||||| |||||||| |||    
T  12804513 ccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacac 12804612  T
Q  407 ttgtcacatttccactt 423  Q
    || ||||||||||||||    
T  12804613 ttttcacatttccactt 12804629  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 431
Target Start/End: Original strand, 50788825 - 50788945
Alignment:
Q  311 gagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgt 410  Q
    |||||||| || ||||||||||| || |||||||| |||||||| || || || || || ||||| || |||||||| |||||||||||||||||||| |    
T  50788825 gagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagcacttat 50788924  T
Q  411 cacatttccacttcatctcac 431  Q
    |||| ||||| ||| ||||||    
T  50788925 cacacttccatttcttctcac 50788945  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 420
Target Start/End: Complemental strand, 12775057 - 12774948
Alignment:
Q  311 gagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgt 410  Q
    |||||||| || |||||||||||||| || ||  | || ||||| ||||| || ||||||||||| || |||||||| |||||||||||||| ||||| |    
T  12775057 gagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaacactttt 12774958  T
Q  411 cacatttcca 420  Q
    |||| |||||    
T  12774957 cacacttcca 12774948  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 431
Target Start/End: Complemental strand, 4160501 - 4160377
Alignment:
Q  307 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcac 406  Q
    |||||||||||||||||||||||||||  | || ||| | ||||||||  ||||||| ||||||||||| || || |||||||||||    ||||| ||     
T  4160501 ccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaacat 4160402  T
Q  407 ttgtcacatttccacttcatctcac 431  Q
    || ||||| ||||||||| ||||||    
T  4160401 ttctcacacttccacttcttctcac 4160377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 420
Target Start/End: Original strand, 31644070 - 31644173
Alignment:
Q  317 agggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatt 416  Q
    ||||| ||||| |||||| | |||||||  || ||||||||||| |||||||||||||| || || ||||| |||||  |||| |||||||| |||||||    
T  31644070 agggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagcacttatcacatt 31644169  T
Q  417 tcca 420  Q
    ||||    
T  31644170 tcca 31644173  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 424
Target Start/End: Original strand, 30518150 - 30518267
Alignment:
Q  307 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcac 406  Q
    |||||| ||||  ||||||||||||||| |||||||||| || ||||| ||||| |||||||||||||| ||||| ||||| |||||    || ||||||    
T  30518150 ccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagcac 30518249  T
Q  407 ttgtcacatttccacttc 424  Q
    || ||||| |||||||||    
T  30518250 ttctcacacttccacttc 30518267  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 431
Target Start/End: Original strand, 22085566 - 22085632
Alignment:
Q  365 tgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttccacttcatctcac 431  Q
    ||||||||||| || |||||||||||||| ||||| || ||||| ||||| ||||||||| ||||||    
T  22085566 tgagctttccaatcagattgaactgcatatttcttggaacacttttcacacttccacttcttctcac 22085632  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 431
Target Start/End: Original strand, 44150814 - 44150926
Alignment:
Q  319 ggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcacttgtcacatttc 418  Q
    ||||||||| |||||| ||||||| || || ||||| |||||   |||||| ||||| ||||||||||| |||||  | |||||||||||||||||||||    
T  44150814 ggttccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttc 44150913  T
Q  419 cacttcatctcac 431  Q
    || ||| ||||||    
T  44150914 catttcttctcac 44150926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 307 - 429
Target Start/End: Complemental strand, 40749514 - 40749392
Alignment:
Q  307 ccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagcac 406  Q
    |||||||||||| || ||||| |||||  | |||||||| || ||||| ||||| | |||||||||||| || ||||| |||||||| ||||| || |||    
T  40749514 ccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaacac 40749415  T
Q  407 ttgtcacatttccacttcatctc 429  Q
    || ||||| ||||| ||| ||||    
T  40749414 ttatcacacttccatttcttctc 40749392  T

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