View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14074_low_2 (Length: 297)
Name: NF14074_low_2
Description: NF14074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14074_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 2591369 - 2591097
Alignment:
| Q |
19 |
attaccactgctgaaattgtttgtatcactagagacaatctatcacccaccaaagatcttacctgtgtaagtgttaaaaatagaatttaatatggatgca |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |
|
|
| T |
2591369 |
attaccactgctgaaattgtttgtaccactagagccaatctatcacccaccaaagatcttacctgtgtaagtgttgaaaaatgaatttaatagagatgca |
2591270 |
T |
|
| Q |
119 |
cactattaatgtaaaatagttttatgtcgtcgtccattgagaactcatgatattatcatgaaagttcactctgtaatcaatatttaaaaattcaaatttt |
218 |
Q |
| |
|
|| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||| | | ||||||||| ||||||||| ||||| |||| |
|
|
| T |
2591269 |
cattattaatgtaaaatagttttacatcgtcatccattgagaactcatgatattatcatgtaagctttccctgtaatcactatttaaaagttcaactttt |
2591170 |
T |
|
| Q |
219 |
atatttgaacaccctttaacttttatacacctattcaacactttattttctatctatatttctgttcttatcac |
292 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||| |||||||||||||| ||||| | ||| ||| |||||| |
|
|
| T |
2591169 |
atatttgaactacctttaac-tttatacacttattcgacactttattttctttctatttgtctcttcatatcac |
2591097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 2622915 - 2622761
Alignment:
| Q |
19 |
attaccactgctgaaattgtttgtatcactagagacaatctatcacccaccaaagatcttacctgtgtaagtgttaaaaatagaatttaatatggatgca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2622915 |
attaccactgctgaaattgtttgtatcactagagacaatctatcacccaccaaagatcttacctgtgtaagtgttaaaaatagaatttaatatggatgca |
2622816 |
T |
|
| Q |
119 |
cactattaatgtaaaatagttttatgtcgtcgtccattgagaactcatgatatta |
173 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2622815 |
cactattaatataaaatagttttatgtcgtcgtccattgagaactcatgatatta |
2622761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 2673274 - 2673343
Alignment:
| Q |
19 |
attaccactgctgaaattgtttgtatcactagagacaatctatcacccaccaaagatcttacctgtgtaa |
88 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2673274 |
attaccactgctgaaattgtttgtaccactagagccaatctatcacccaccaaagatcttacctgtgtaa |
2673343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 2622760 - 2622699
Alignment:
| Q |
219 |
atatttgaacaccctttaacttttatacacctattcaacactttattttctatctatatttct |
281 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2622760 |
atatttgaacaccctttaacttt-atacacctattcaacactttcttttctatctatatttct |
2622699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 2642114 - 2642181
Alignment:
| Q |
19 |
attaccactgctgaaattgtttgtatcactagagacaatctatcacccaccaaagatcttacctgtgt |
86 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| | ||||||||||| ||||||||||||||||||||| |
|
|
| T |
2642114 |
attaccactgctgatattgtttgtaccactagcgccaatctatcactcaccaaagatcttacctgtgt |
2642181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 2569899 - 2569965
Alignment:
| Q |
19 |
attaccactgctgaaattgtttgtatcactagagacaatctatcacccaccaaagatcttacctgtg |
85 |
Q |
| |
|
|||||||| |||||||||||||||| |||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
2569899 |
attaccaccgctgaaattgtttgtactactaatgccaatctatcacccaccaaagatcttacctgtg |
2569965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 2439420 - 2439357
Alignment:
| Q |
21 |
taccactgctgaaattgtttgtatcactagagacaatctatcacccaccaaagatcttacctgt |
84 |
Q |
| |
|
||||| |||||| || ||||||| |||||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
2439420 |
taccattgctgatatagtttgtaccactagtgacaaactatcacccaccacagatcttacctgt |
2439357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 2673373 - 2673419
Alignment:
| Q |
102 |
aatttaatatggatgcacactattaatgtaaaatagttttatgtcgt |
148 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2673373 |
aatttaatggggatgcacactattaatgtaaaatagttatatgtcgt |
2673419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 2597455 - 2597516
Alignment:
| Q |
19 |
attaccactgctgaaattgtttgtatcactagagacaatctatcacccaccaaagatcttac |
80 |
Q |
| |
|
|||| |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||| |
|
|
| T |
2597455 |
attatcactgctgaaattgtttgtactgctaatgccaatcgatcacccaccaaagatcttac |
2597516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University