View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14074_low_3 (Length: 261)
Name: NF14074_low_3
Description: NF14074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14074_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 19649063 - 19648832
Alignment:
| Q |
13 |
atacttgattccggtacaacattgacaattttaccgtctcatgtttatactaatttggaatcggcggtggcacaactggtgaaactagctcgtgttgatg |
112 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
19649063 |
atacttgattctggtacaacattgactcttttaccgtctcatgtttatactaatttggaatcggcggtagcacaactggtgaaactagatcgtgttgatg |
19648964 |
T |
|
| Q |
113 |
atcctaatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacattttaaaggtgcagatattaagttgaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19648963 |
atcctaatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacattttaaaggtgcagatattaagttgaa |
19648864 |
T |
|
| Q |
213 |
cccaattagtacctttgctcatgttgctgatg |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
19648863 |
cccaattagtacctttgctcatgttgctgatg |
19648832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 34666186 - 34666398
Alignment:
| Q |
17 |
ttgattccggtacaacattgacaattttaccgtctcatgtttatactaatttggaatcggcggtggcacaactggtgaaactagctcgtgttgatgatcc |
116 |
Q |
| |
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||||||| ||||||||||||||| || |||| || | || |||||||| |||||||| || |||| | |||||||||||| ||||||||||||||| |
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| T |
34666186 |
ttgattcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcc |
34666285 |
T |
|
| Q |
117 |
taatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacattttaaaggtgcagatattaagttgaaccca |
216 |
Q |
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|||||||| ||| | ||| || |||||| | | |||| | |||||||||||||||||||||| ||||||||||||||||| |||||| ||||| | | |
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| T |
34666286 |
taatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgcacattttaaaggtgccgatattgagttgcattct |
34666385 |
T |
|
| Q |
217 |
attagtacctttg |
229 |
Q |
| |
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||||||||||||| |
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| T |
34666386 |
attagtacctttg |
34666398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 34646492 - 34646704
Alignment:
| Q |
17 |
ttgattccggtacaacattgacaattttaccgtctcatgtttatactaatttggaatcggcggtggcacaactggtgaaactagctcgtgttgatgatcc |
116 |
Q |
| |
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||||||| ||||||||||||||| || |||| || | || |||||||| |||||||| || |||| | |||||||||||| ||||||||||||||| |
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| T |
34646492 |
ttgattcaggtacaacattgacacttataccttccgacgtctatactaacttggaatcagctgtggtggatttggtgaaactagatcgtgttgatgatcc |
34646591 |
T |
|
| Q |
117 |
taatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacattttaaaggtgcagatattaagttgaaccca |
216 |
Q |
| |
|
|||||||| ||| | ||| || |||||| | | |||| | |||||||||||||||||||||| | ||||||||||||||| ||| || ||||| | | |
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| T |
34646592 |
taatcaacaattcagcctatgctatagtttgaaatcaaatgaatatgattttcctataatcaccgtacattttaaaggtgccgatgttgagttgcattct |
34646691 |
T |
|
| Q |
217 |
attagtacctttg |
229 |
Q |
| |
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||||||||||||| |
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|
| T |
34646692 |
attagtacctttg |
34646704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 40718193 - 40718405
Alignment:
| Q |
17 |
ttgattccggtacaacattgacaattttaccgtctcatgtttatactaatttggaatcggcggtggcacaactggtgaaactagctcgtgttgatgatcc |
116 |
Q |
| |
|
||||||| |||||||| ||||| ||||| || ||| || |||||| |||||||||||| || |||||| || |||||||||| |||||||||||||| |
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| T |
40718193 |
ttgattcaggtacaacgttgacgattttgccatctaatatttataataatttggaatcagccgtggcagaatctgtgaaactagagcgtgttgatgatcc |
40718292 |
T |
|
| Q |
117 |
taatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacattttaaaggtgcagatattaagttgaaccca |
216 |
Q |
| |
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| ||||| |||||||||||| ||||||| |||||||||| |||| | |||||| |||| || || |||||||||||||| |||||||||||| | || |
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| T |
40718293 |
aactcaacaattaaacctttgctatagtaccacatcagacatatataactttcctctaataacagcgcattttaaaggtgcggatattaagttgcatccc |
40718392 |
T |
|
| Q |
217 |
attagtacctttg |
229 |
Q |
| |
|
||||||||||||| |
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|
| T |
40718393 |
attagtacctttg |
40718405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 14183472 - 14183663
Alignment:
| Q |
53 |
atgtttatactaatttggaatcggcggtggcacaactggtgaaactagctcgtgttgatgatcctaatcaactattaaacctttgttatagtatcacatc |
152 |
Q |
| |
|
||||||||| |||||||||||| |||||| || |||||||||| |||||| ||||||| | | | |||| |||||||| ||||| ||||||| |
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| T |
14183472 |
atgtttataataatttggaatcagcggtgttggaattggtgaaactgaagcgtgttaatgatccaacccgattatttaacctttgctatagcgtcacatc |
14183571 |
T |
|
| Q |
153 |
agaccaatatgattttcctataatcactgcacattttaaaggtgcagatattaagttgaacccaattagtacctttgctcatgttgctgatg |
244 |
Q |
| |
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||| |||||||||||||||||| || |||||||||||||||| ||| |||||||| | || |||||||| |||| | ||||||| |||| |
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| T |
14183572 |
agatggatatgattttcctataataacgacacattttaaaggtgcggatgttaagttgcatcctattagtacatttgttgatgttgcagatg |
14183663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 14192472 - 14192570
Alignment:
| Q |
103 |
cgtgttgatgatcctaatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacattttaaaggtgcagat |
201 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||||| |||||| ||| | | || ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
14192472 |
cgtgttgacgatcctactcaaacattaaacctttgctatagtgtcaaagctgagggatatgattttcctataatcacaatgcattttaaaggtgcagat |
14192570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 14201537 - 14201575
Alignment:
| Q |
168 |
tcctataatcactgcacattttaaaggtgcagatattaa |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
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| T |
14201537 |
tcctttaatcactgcacattttaaaggtgcagatattaa |
14201575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 244
Target Start/End: Original strand, 1390718 - 1390804
Alignment:
| Q |
158 |
aatatgattttcctataatcactgcacattttaaaggtgcagatattaagttgaacccaattagtacctttgctcatgttgctgatg |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||||| ||||||| ||| ||||| |||| |
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|
| T |
1390718 |
aatatgattttcctataatcactgcacattttgaaggtgcagatattaagttgcaatctattagcacctttgttcaagttgccgatg |
1390804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 45645681 - 45645904
Alignment:
| Q |
10 |
attatacttgattccggtacaacattgacaattttaccgtctcatgtttatactaatttggaatcggcggtggcacaactggtgaaactagctcgtgttg |
109 |
Q |
| |
|
|||||| ||||||| ||||||||||||| ||||||| || | ||||||| ||||||||||| || |||| | ||||||||||| ||||| | |
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|
| T |
45645681 |
attataattgattcaggtacaacattgatggttttaccagctgacgtttataaaaatttggaatcagctgtggttgatttggtgaaactaaaacgtgtgg |
45645780 |
T |
|
| Q |
110 |
atgatcctaatcaactattaaacctttgttatagtatcacatcagaccaatatgattttcctataatcactgcacattttaaaggtgcagatattaagtt |
209 |
Q |
| |
|
|||||||| || ||||||| ||| || |||||| |||| ||| |||||||||||||| ||||||| ||||||||||||||||| ||| || |||| |
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|
| T |
45645781 |
atgatccttataaactattcggcctatgctatagtgcgacattagatgaatatgattttcctctaatcaccgcacattttaaaggtgctgatgttgagtt |
45645880 |
T |
|
| Q |
210 |
gaacccaattagtacctttgctca |
233 |
Q |
| |
|
| | | |||||||||||| |||| |
|
|
| T |
45645881 |
gcattctattagtacctttactca |
45645904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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