View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14075_high_10 (Length: 241)
Name: NF14075_high_10
Description: NF14075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14075_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 39693958 - 39693753
Alignment:
| Q |
20 |
tcttaacccaaaatcttaagacattgagtttatactctcacttataaataacgtgagatttttaactcac--ttgccacgcattagggtctgacatcaaa |
117 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |
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| T |
39693958 |
tcttaacccaaaatcttaaggcattgagtttatgctctcacttataaataacgtgagatttttaactcacacttgctacgcattagggtttgacatcaaa |
39693859 |
T |
|
| Q |
118 |
aagtagcactccactatctgcgactaaaatctacgaccttgattcttcatcatttctattgaaacaaaaagaaaatcatcacaacaatggactccaacac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39693858 |
aagtagcactccactatctgcgactaaaatctacgaccttgattcttcatcatttctattgaaacagaaagaaaatcatcacaacaatggactccaacac |
39693759 |
T |
|
| Q |
218 |
caaaag |
223 |
Q |
| |
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|||||| |
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|
| T |
39693758 |
caaaag |
39693753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 10498841 - 10498881
Alignment:
| Q |
13 |
catcatctcttaacccaaaatcttaagacattgagtttata |
53 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||| |
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| T |
10498841 |
catcatatcttaacccaaaactttaagacattgagtttata |
10498881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 50400047 - 50400019
Alignment:
| Q |
20 |
tcttaacccaaaatcttaagacattgagt |
48 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
50400047 |
tcttaacccaaaatcttaagacattgagt |
50400019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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