View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14075_high_2 (Length: 459)

Name: NF14075_high_2
Description: NF14075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14075_high_2
NF14075_high_2
[»] scaffold0014 (1 HSPs)
scaffold0014 (8-442)||(77831-78265)
[»] chr6 (4 HSPs)
chr6 (146-442)||(29484272-29484568)
chr6 (6-44)||(18453149-18453187)
chr6 (8-54)||(22420916-22420962)
chr6 (6-54)||(19656243-19656291)
[»] chr5 (3 HSPs)
chr5 (8-54)||(24212317-24212363)
chr5 (8-54)||(29447847-29447893)
chr5 (8-54)||(35852572-35852618)
[»] chr3 (2 HSPs)
chr3 (8-54)||(6808086-6808132)
chr3 (6-54)||(10542552-10542600)
[»] chr1 (2 HSPs)
chr1 (96-176)||(90395-90476)
chr1 (17-54)||(8882114-8882151)
[»] scaffold0247 (1 HSPs)
scaffold0247 (17-54)||(69-106)
[»] chr4 (2 HSPs)
chr4 (8-49)||(15791743-15791784)
chr4 (6-54)||(53631487-53631535)
[»] scaffold1283 (1 HSPs)
scaffold1283 (6-54)||(1481-1529)
[»] scaffold0107 (1 HSPs)
scaffold0107 (6-54)||(36147-36195)
[»] scaffold0096 (1 HSPs)
scaffold0096 (6-54)||(20969-21017)
[»] scaffold0034 (1 HSPs)
scaffold0034 (8-44)||(119804-119840)
[»] scaffold0001 (1 HSPs)
scaffold0001 (8-40)||(497395-497427)
[»] chr8 (1 HSPs)
chr8 (6-54)||(5760523-5760571)
[»] chr7 (1 HSPs)
chr7 (6-54)||(32301075-32301123)


Alignment Details
Target: scaffold0014 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Original strand, 77831 - 78265
Alignment:
Q  8 gacatcatcaacaacttaagacttcaatactttgaaaaaacaacttaaggacttaattctcaaaatcgtctattttcatatagccaattcaattcatcat 107  Q
    |||| ||| ||||||||| |||| |||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  77831 gacaacattaacaacttacgactccaatactttggaaagacaacttaaagacttaattctcaaaatcgtctattttcatatagccaattcaattcatcat 77930  T
Q  108 ctaaaagcttattatttcaaacacagttaaactaatagaataattttcattataacaattatccctatattatcacttaaaataaagttataagctatta 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  77931 ctaaaaacttattatttcaaacacagttaaactaatagaataattttcattataacaattatccctatattatcacttaaaagaaagttataagctatta 78030  T
Q  208 tttgagataaatagcatcaaagaactagcatgtcagcatggattttcaagaacagtagcgtgaaagtaaaaacatacaatttggcataaacaaaagtcct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  78031 tttgagataaatagcatcaaagaactagcatgtcagcatggattttcaagaacagtagcgtgaaagtaaaaacatacaatttggcataaacaaaagtcct 78130  T
Q  308 tagatcttatccaatcctgtagaaagttgataggttcattatttagaggctacttaattacatacccaacctataacccataaacataaaatatagaagc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  78131 tagatcttatccaatcctgtagaaagttgataggttcattatttagaggctacttaattacatacccaacctataacccataaacataaaatatagaagc 78230  T
Q  408 aaaataaccatatcagtaccttgtcataatctcat 442  Q
    ||||||||||||||| |||||||||||||||||||    
T  78231 aaaataaccatatcaataccttgtcataatctcat 78265  T

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Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 146 - 442
Target Start/End: Complemental strand, 29484568 - 29484272
Alignment:
Q  146 aataattttcattataacaattatccctatattatcacttaaaataaagttataagctattatttgagataaatagcatcaaagaactagcatgtcagca 245  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29484568 aataattttcattataacaattatccctatattatcacttagaagaaagttataagctattatttgagataaatagcatcaaagaactagcatgtcagca 29484469  T
Q  246 tggattttcaagaacagtagcgtgaaagtaaaaacatacaatttggcataaacaaaagtccttagatcttatccaatcctgtagaaagttgataggttca 345  Q
    |||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||     
T  29484468 tggattttcaagaagagtagcgggaaagtaaaaacatgcaatttggcataaacaaaagtccttagatcttatccaatccagtagaaagttgataggttcc 29484369  T
Q  346 ttatttagaggctacttaattacatacccaacctataacccataaacataaaatatagaagcaaaataaccatatcagtaccttgtcataatctcat 442  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29484368 ttatttagaggctatttaattacatacccaacctataacccatcaacataaaatatagaagcaagataaccatatcagtaccttgtcataatctcat 29484272  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 18453149 - 18453187
Alignment:
Q  6 tggacatcatcaacaacttaagacttcaatactttgaaa 44  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  18453149 tggacaacatcaacaacttaagactccaatactttgaaa 18453187  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 22420916 - 22420962
Alignment:
Q  8 gacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||||| |||||||||||||| |||||||||| ||| ||||||||    
T  22420916 gacatcattaacaacttaagactccaatactttggaaagacaactta 22420962  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 19656291 - 19656243
Alignment:
Q  6 tggacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||| |||||||||||||||||| |||||||||| ||  ||||||||    
T  19656291 tggacaacatcaacaacttaagactccaatactttggaatgacaactta 19656243  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 24212317 - 24212363
Alignment:
Q  8 gacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||| ||| |||||||||||||| |||||||||||||| ||||||||    
T  24212317 gacaacattaacaacttaagactccaatactttgaaaagacaactta 24212363  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 29447847 - 29447893
Alignment:
Q  8 gacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||| |||||||||||||||||| |||||||||| ||| ||||||||    
T  29447847 gacaacatcaacaacttaagactccaatactttggaaagacaactta 29447893  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 35852572 - 35852618
Alignment:
Q  8 gacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||| ||| |||||||||||||| |||||||||||||| ||||||||    
T  35852572 gacaacattaacaacttaagactccaatactttgaaaagacaactta 35852618  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 6808086 - 6808132
Alignment:
Q  8 gacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||| ||| ||||||||||||||||||||||||| ||| ||||||||    
T  6808086 gacaacattaacaacttaagacttcaatactttggaaagacaactta 6808132  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 10542600 - 10542552
Alignment:
Q  6 tggacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||| |||| ||||||||||||| |||||||||| || |||||||||    
T  10542600 tggacaacatcgacaacttaagactccaatactttggaacaacaactta 10542552  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 90395 - 90476
Alignment:
Q  96 tcaattcatcatctaaaagcttattatttcaaacacagttaaac-taatagaa-taattttcattataacaattatccctata 176  Q
    |||||||| ||||||||  |||||||||||||||| | |||||  || ||||| ||||||||||||||||||||||| |||||    
T  90395 tcaattcaccatctaaat-cttattatttcaaacataattaaaaatagtagaaataattttcattataacaattatctctata 90476  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 8882114 - 8882151
Alignment:
Q  17 aacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  8882114 aacaacttaagactccaatactttgaaaagacaactta 8882151  T

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Target: scaffold0247 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 69 - 106
Alignment:
Q  17 aacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  69 aacaacttaagactccaatactttgaaaagacaactta 106  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 15791743 - 15791784
Alignment:
Q  8 gacatcatcaacaacttaagacttcaatactttgaaaaaaca 49  Q
    |||| |||||||||||||||||| ||||||||||||| ||||    
T  15791743 gacaacatcaacaacttaagactccaatactttgaaacaaca 15791784  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 53631535 - 53631487
Alignment:
Q  6 tggacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||| |||||||||||||||||| |||||||||| ||  ||||||||    
T  53631535 tggacaacatcaacaacttaagactccaatactttggaatgacaactta 53631487  T

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Target: scaffold1283 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1283
Description:

Target: scaffold1283; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 1529 - 1481
Alignment:
Q  6 tggacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||| |||||||||||||||||| |||||||||| ||  ||||||||    
T  1529 tggacaacatcaacaacttaagactccaatactttggaatgacaactta 1481  T

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Target: scaffold0107 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 36147 - 36195
Alignment:
Q  6 tggacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||| |||||||||||||||||| |||||||||| ||| ||| ||||    
T  36147 tggacaacatcaacaacttaagactccaatactttggaaagacatctta 36195  T

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Target: scaffold0096 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 20969 - 21017
Alignment:
Q  6 tggacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||| |||| ||||||||||||| |||||||||| || |||||||||    
T  20969 tggacaacatcgacaacttaagactccaatactttggaacaacaactta 21017  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 119804 - 119840
Alignment:
Q  8 gacatcatcaacaacttaagacttcaatactttgaaa 44  Q
    |||| |||||||||||||||||| |||||||||||||    
T  119804 gacaacatcaacaacttaagactccaatactttgaaa 119840  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 497395 - 497427
Alignment:
Q  8 gacatcatcaacaacttaagacttcaatacttt 40  Q
    |||| ||||||||||||||||||||||||||||    
T  497395 gacaacatcaacaacttaagacttcaatacttt 497427  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 5760523 - 5760571
Alignment:
Q  6 tggacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||| |||||||||||||||||| |||||||||| ||  ||||||||    
T  5760523 tggacaacatcaacaacttaagactccaatactttggaatgacaactta 5760571  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 32301075 - 32301123
Alignment:
Q  6 tggacatcatcaacaacttaagacttcaatactttgaaaaaacaactta 54  Q
    |||||| |||||||||||||||||| |||||||||| ||  ||||||||    
T  32301075 tggacaacatcaacaacttaagactccaatactttggaacgacaactta 32301123  T

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