View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14075_low_5 (Length: 367)
Name: NF14075_low_5
Description: NF14075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14075_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 365
Target Start/End: Complemental strand, 47713214 - 47712871
Alignment:
| Q |
22 |
cattcttgaatggtcaccaaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaacta |
121 |
Q |
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| T |
47713214 |
cattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtggatccatttaatcgagttcttggaaacttgatgaggaaactg |
47713115 |
T |
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| Q |
122 |
aaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagt |
221 |
Q |
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| T |
47713114 |
agagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagt |
47713015 |
T |
|
| Q |
222 |
gtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgt |
321 |
Q |
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| T |
47713014 |
gtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgt |
47712915 |
T |
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| Q |
322 |
cgaaccaagttgtaatattagatatgaagtctatcgcatctctg |
365 |
Q |
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| T |
47712914 |
caaaccaagttgtaatattagatatgaagtctatcgcttctctg |
47712871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 35 - 349
Target Start/End: Complemental strand, 47760116 - 47759802
Alignment:
| Q |
35 |
tcaccaaagttttatatgtcaaacccgaacaatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctg |
134 |
Q |
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||||||||||||||||||| ||| | |||||||| |||||||||| |||||| | ||||||||| ||||||||||||||||| ||||| | ||||| |
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| T |
47760116 |
tcaccaaagttttatatgtggaacatatataatgtaacagaggtggatcaatttaaccaagttcttgggaacttgatgaggaaactgaaagagaaagctg |
47760017 |
T |
|
| Q |
135 |
catcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgattt |
234 |
Q |
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|||||||||||||||||| ||| |||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
47760016 |
catcaagtgattctcgtcgtaaatttgctacagataatgcaactgatgtaaatttgaattttcaaaccatatatggtcttgttcagtgcacacctgattt |
47759917 |
T |
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| Q |
235 |
gtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcgaaccaagttgt |
334 |
Q |
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| T |
47759916 |
gtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaagttgttgtaataacaagattggtggtagagttctcaaaccaagttgt |
47759817 |
T |
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| Q |
335 |
aatattagatatgaa |
349 |
Q |
| |
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||||| ||||||||| |
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| T |
47759816 |
aatatcagatatgaa |
47759802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 65 - 349
Target Start/End: Complemental strand, 47745754 - 47745479
Alignment:
| Q |
65 |
aatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctg |
164 |
Q |
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||||||||||| |||| || |||||||| ||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||||| |
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| T |
47745754 |
aatgtaaccgatgtggctcaatttaatcaagttcttgggaacttgatgaggaaactcaatgaaatagctgcatcaggtgattctcgtcgtaagtttgcta |
47745655 |
T |
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| Q |
165 |
cggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttaga |
264 |
Q |
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| | |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
47745654 |
ccgctaatgcaact---------ttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttaga |
47745564 |
T |
|
| Q |
265 |
gtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcgaaccaagttgtaatattagatatgaa |
349 |
Q |
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| |||||| ||||||| ||||| || | |||||||||||||||| |||||||| || ||| |||||||||||||||||||||| |
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| T |
47745563 |
gcgtgctatttcagaaactccaagttttttttataacaagattggtggtagagttctcaaactaagttgtaatattagatatgaa |
47745479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 65 - 355
Target Start/End: Complemental strand, 47717965 - 47717684
Alignment:
| Q |
65 |
aatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctg |
164 |
Q |
| |
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|||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
47717965 |
aatgcaaccgaggtggatcaatttaatcaagttcttgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgcta |
47717866 |
T |
|
| Q |
165 |
cggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttaga |
264 |
Q |
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| | |||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
47717865 |
ccgctaatgcaact---------ttgaattttgaaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttaga |
47717775 |
T |
|
| Q |
265 |
gtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcgaaccaagttgtaatattagatatgaagtctat |
355 |
Q |
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| |||||| ||||||||||| ||||| | | |||||||| |||| ||| |||| || |||||||||| ||||||||| ||||| ||||| |
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| T |
47717774 |
gcgtgctatttcagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctat |
47717684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 47704941 - 47704889
Alignment:
| Q |
297 |
ataacaagattggttgtagagttgtcgaaccaagttgtaatattagatatgaa |
349 |
Q |
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|||||||||||||| | |||||| || |||||||||| ||||||||||||||| |
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| T |
47704941 |
ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa |
47704889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 47811738 - 47811779
Alignment:
| Q |
196 |
tcaaaccatatatggtcttgtgcagtgtacacctgatttgtc |
237 |
Q |
| |
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|||||| ||| |||||||||| |||||||||||||||||||| |
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| T |
47811738 |
tcaaacaataaatggtcttgttcagtgtacacctgatttgtc |
47811779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 6521987 - 6522027
Alignment:
| Q |
197 |
caaaccatatatggtcttgtgcagtgtacacctgatttgtc |
237 |
Q |
| |
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|||||||||||||||||||| || || |||||||||||||| |
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| T |
6521987 |
caaaccatatatggtcttgttcaatgcacacctgatttgtc |
6522027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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