View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14075_low_6 (Length: 286)

Name: NF14075_low_6
Description: NF14075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14075_low_6
NF14075_low_6
[»] chr8 (13 HSPs)
chr8 (18-269)||(24520982-24521236)
chr8 (18-106)||(27660012-27660100)
chr8 (18-101)||(29381685-29381768)
chr8 (20-95)||(24110064-24110139)
chr8 (61-150)||(14627710-14627802)
chr8 (23-149)||(17101326-17101454)
chr8 (17-104)||(24113675-24113762)
chr8 (202-268)||(24530672-24530738)
chr8 (23-105)||(25226755-25226836)
chr8 (39-104)||(23868823-23868888)
chr8 (18-146)||(21315275-21315404)
chr8 (17-96)||(2637696-2637773)
chr8 (18-105)||(6885651-6885736)
[»] chr5 (9 HSPs)
chr5 (18-150)||(19051984-19052119)
chr5 (18-102)||(24243358-24243442)
chr5 (18-126)||(18831136-18831245)
chr5 (18-105)||(18938522-18938609)
chr5 (18-103)||(24661902-24661985)
chr5 (18-111)||(34488316-34488407)
chr5 (18-150)||(25401655-25401788)
chr5 (18-106)||(18207588-18207674)
chr5 (66-106)||(17470650-17470690)
[»] scaffold0032 (1 HSPs)
scaffold0032 (18-150)||(102725-102860)
[»] chr7 (17 HSPs)
chr7 (18-150)||(1847625-1847760)
chr7 (18-150)||(39272487-39272622)
chr7 (18-110)||(13759289-13759381)
chr7 (18-105)||(3326917-3327004)
chr7 (18-105)||(6043120-6043207)
chr7 (22-105)||(8978332-8978415)
chr7 (20-105)||(2564555-2564640)
chr7 (18-150)||(4819491-4819624)
chr7 (18-150)||(10941807-10941940)
chr7 (18-150)||(4786447-4786580)
chr7 (19-106)||(9730937-9731022)
chr7 (18-106)||(21233146-21233232)
chr7 (79-149)||(18366326-18366399)
chr7 (85-150)||(2348311-2348379)
chr7 (20-101)||(9313102-9313181)
chr7 (82-149)||(8053507-8053577)
chr7 (18-105)||(12330042-12330127)
[»] scaffold0638 (1 HSPs)
scaffold0638 (18-105)||(146-233)
[»] chr6 (14 HSPs)
chr6 (18-149)||(9517370-9517504)
chr6 (19-124)||(20144426-20144534)
chr6 (19-124)||(22188305-22188413)
chr6 (18-150)||(14638204-14638339)
chr6 (18-150)||(1635627-1635759)
chr6 (18-146)||(22409651-22409780)
chr6 (18-105)||(18074687-18074772)
chr6 (63-106)||(2587385-2587428)
chr6 (71-149)||(24478922-24479003)
chr6 (18-122)||(4340412-4340517)
chr6 (18-107)||(8245615-8245702)
chr6 (17-91)||(17883477-17883550)
chr6 (18-106)||(24216212-24216298)
chr6 (79-107)||(17382668-17382696)
[»] chr2 (13 HSPs)
chr2 (18-150)||(31804135-31804268)
chr2 (18-150)||(27908502-27908637)
chr2 (18-105)||(17675019-17675106)
chr2 (18-105)||(27541235-27541322)
chr2 (18-126)||(13777091-13777200)
chr2 (18-105)||(17629711-17629798)
chr2 (18-150)||(25887220-25887352)
chr2 (26-105)||(28929329-28929408)
chr2 (18-150)||(15339888-15340021)
chr2 (23-149)||(30412247-30412375)
chr2 (18-106)||(12950384-12950470)
chr2 (73-107)||(16075825-16075859)
chr2 (61-105)||(17350036-17350080)
[»] chr1 (15 HSPs)
chr1 (18-105)||(16179692-16179779)
chr1 (79-149)||(15159910-15159983)
chr1 (23-104)||(21449767-21449847)
chr1 (18-105)||(31235287-31235372)
chr1 (18-104)||(9402279-9402363)
chr1 (18-107)||(15572750-15572837)
chr1 (18-145)||(26648361-26648489)
chr1 (66-122)||(28008780-28008839)
chr1 (23-150)||(15543359-15543488)
chr1 (18-105)||(16112401-16112486)
chr1 (18-105)||(33191362-33191447)
chr1 (20-146)||(44796018-44796145)
chr1 (18-104)||(15812477-15812561)
chr1 (18-83)||(13266845-13266908)
chr1 (73-106)||(16113581-16113614)
[»] scaffold0054 (1 HSPs)
scaffold0054 (19-124)||(72697-72805)
[»] chr3 (11 HSPs)
chr3 (18-150)||(19171182-19171315)
chr3 (18-150)||(16245046-16245179)
chr3 (18-79)||(19910111-19910172)
chr3 (18-150)||(2166992-2167125)
chr3 (65-150)||(12772288-12772376)
chr3 (18-150)||(41509104-41509237)
chr3 (32-105)||(21302603-21302676)
chr3 (85-147)||(18458253-18458318)
chr3 (18-150)||(9781234-9781366)
chr3 (18-147)||(5508982-5509111)
chr3 (21-147)||(3115744-3115870)
[»] chr4 (12 HSPs)
chr4 (22-104)||(7582988-7583070)
chr4 (18-105)||(17107278-17107364)
chr4 (23-149)||(17217495-17217623)
chr4 (18-150)||(19635869-19636002)
chr4 (18-150)||(11780984-11781117)
chr4 (24-150)||(24638788-24638916)
chr4 (18-106)||(25024103-25024189)
chr4 (18-105)||(19092992-19093077)
chr4 (83-149)||(13692127-13692196)
chr4 (62-104)||(15165457-15165499)
chr4 (18-105)||(5956641-5956726)
chr4 (18-150)||(19604818-19604952)
[»] scaffold0001 (1 HSPs)
scaffold0001 (19-150)||(81242-81374)
[»] scaffold0008 (1 HSPs)
scaffold0008 (18-105)||(55553-55639)
[»] scaffold1156 (1 HSPs)
scaffold1156 (23-100)||(230-306)
[»] scaffold0134 (1 HSPs)
scaffold0134 (18-105)||(11951-12036)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 24520982 - 24521236
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatctt---gaa 114  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||   |||    
T  24520982 agtaagtacttaggaggtgacgttactaagaccgaatagtaactctgctgaacctaagatgtaactgattagtaattaaggaaacaagtatcttcttgaa 24521081  T
Q  115 ggaaataagttgtagccaaatagaaccattctcttacgacttaaacatctagagctacatagttcaagtattcaacaataaaggcggctgaagttttcgt 214  Q
    ||||||||||||||| | |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  24521082 ggaaataagttgtagtctaatagaaccattctcttaggacttaaacatctatagctacatagttcaagtattcaacaacaaaggctgctgaagttttcgt 24521181  T
Q  215 tatttatatgtttttgttatacatgtactctccaccaatattaacttcttgttgt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24521182 tatttatatgtttttgttatacatgtactctccaccaatattaacttcttgttgt 24521236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 27660100 - 27660012
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagt 106  Q
    |||||||| ||| |||||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||| |||||||||||||    
T  27660100 agtaagtatttatgaggtgacattactaagactgagtagtaactctgctaaacctaggatgtaactggttagtaactaaggaaacaagt 27660012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 29381685 - 29381768
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaa 101  Q
    |||||||||||||||| |||| ||||||| || |||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  29381685 agtaagtacttaggagctgacattactaacactgagtagtaactctgttgaacctaggatgtaactggttagtaattaaggaaa 29381768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 24110064 - 24110139
Alignment:
Q  20 taagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaatta 95  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||    
T  24110064 taagtacataggaggtggcattactaagactgagtagtaactctactgaacctaggatgtaactggttagtaatta 24110139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 150
Target Start/End: Complemental strand, 14627802 - 14627710
Alignment:
Q  61 tctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaaggaaataagttgtagccaaatagaaccattctctta 150  Q
    ||||||||| ||| || |||||| |||| |||||||||||||||||||||   |||||||||||||| |||||| ||||||||||||||||||    
T  14627802 tctgctgaacctaagaggtaactagttaataattaaggaaacaagtatctgcttgaaggaaataagtcgtagcctaatagaaccattctctta 14627710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 17101326 - 17101454
Alignment:
Q  23 gtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaaggaaa 119  Q
    |||||||||||||||  |||||||||| ||||  |  |||| | ||| ||||||||||||| ||||||||||| ||||||||||  ||   | |||||||    
T  17101326 gtacttaggaggtgatattactaagactgagtgatg-ctctaccgaacctaggatgtaactagttagtaattagggaaacaagtggctaactaaaggaaa 17101424  T
Q  120 taagttgtagccaaatagaaccattctctt 149  Q
    |||||||||||| |||||||||||||||||    
T  17101425 taagttgtagcccaatagaaccattctctt 17101454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 24113675 - 24113762
Alignment:
Q  17 cagtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaa 104  Q
    ||||||||||||||||| |||| ||||||||||  ||||| |||| ||||||| ||||||| ||||||||||||| ||| ||||||||    
T  24113675 cagtaagtacttaggagatgacattactaagactaagtagaaactttgctgaacctaggatataactggttagtatttagggaaacaa 24113762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 24530672 - 24530738
Alignment:
Q  202 ctgaagttttcgttatttatatgtttttgttatacatgtactctccaccaatattaacttcttgttg 268  Q
    ||||||||||| |||||||||||||| | ||||| |||||||||| |||||||||||||| ||||||    
T  24530672 ctgaagttttcattatttatatgtttctattatatatgtactctctaccaatattaacttgttgttg 24530738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 105
Target Start/End: Complemental strand, 25226836 - 25226755
Alignment:
Q  23 gtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    |||||||||||||||| |||||||||| |||| ||  |||| | ||| ||||||||||||||||||||||||| |||||||||    
T  25226836 gtacttaggaggtgacattactaagactgagtggtg-ctctaccgaacctaggatgtaactggttagtaattagggaaacaag 25226755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 23868823 - 23868888
Alignment:
Q  39 gttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaa 104  Q
    ||||||||||  ||| |||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  23868823 gttactaagattgaggagtaactctggtgaaccaaggatgtaactggttagtaattaaggaaacaa 23868888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 21315404 - 21315275
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatctt---gaa 114  Q
    ||||||||||| ||||||||| ||||||| |   ||||  || |||  |||| |||||| |||||| |||||| ||||||||||||||| ||||   |||    
T  21315404 agtaagtacttgggaggtgacattactaatatttagta--aaatctattgaacctaggaggtaactagttagtgattaaggaaacaagtgtcttcttgaa 21315307  T
Q  115 ggaaataagttgtagccaaatagaaccattct 146  Q
    |||||||||| |||||| ||||||| ||||||    
T  21315306 ggaaataagtcgtagcctaatagaaacattct 21315275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 2637773 - 2637696
Alignment:
Q  17 cagtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaa 96  Q
    |||||||||||||||||||||| ||||||| |  |||||  || |||| |||| ||||||||||||| |||| |||||||    
T  2637773 cagtaagtacttaggaggtgacattactaatattgagta--aaatctgttgaacctaggatgtaactagttattaattaa 2637696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 6885736 - 6885651
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||||||||||||||||| |||  |||||  ||||  || ||||||||| ||||||||||||| ||||   |||| |||||||||    
T  6885736 agtaagtacttaggaggtgacattatcaagacttagta--aaatctgctgaacctaggatgtaactagttatagattagggaaacaag 6885651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 19052119 - 19051984
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtat---cttgaa 114  Q
    |||||||||||||||||| || |||||||||| ||||||||||||||||||| ||| |||||||||  |||||||||||||||| ||||||   ||||||    
T  19052119 agtaagtacttaggaggttacattactaagactgagtagtaactctgctgaacctaagatgtaactaattagtaattaaggaaaaaagtatctgcttgaa 19052020  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||||||| |||||| |||||||||||| |||||    
T  19052019 ggaaataagtcgtagcctaatagaaccattatctta 19051984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 24243358 - 24243442
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaac 102  Q
    ||||||||||||||||||||| ||| |||||| ||||||||||||||||||  ||||||||||||||||||||||||| ||||||    
T  24243358 agtaagtacttaggaggtgacattattaagactgagtagtaactctgctgatcctaggatgtaactggttagtaattagggaaac 24243442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 18831245 - 18831136
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaa---gtatcttgaa 114  Q
    ||||||||||||||| ||||| ||||||||||||||||  || ||||||||  |||||| |||||| |||||  |||||||||||||   || |||||||    
T  18831245 agtaagtacttaggaagtgacattactaagaccgagta--aaatctgctgagcctaggaggtaactagttagagattaaggaaacaagaggtttcttgaa 18831148  T
Q  115 ggaaataagttg 126  Q
    ||||||||||||    
T  18831147 ggaaataagttg 18831136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 18938609 - 18938522
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||||||  || || |||||  |||| |||||||||    
T  18938609 agtaagtacttaggaggtgacattactaagactgagtagtatctctgctgaacctaggagatacctagttagagattagggaaacaag 18938522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 24661902 - 24661985
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaaca 103  Q
    ||||||||||||||||||||| ||||||| |  |||||  || |||||| |||||||||||||||| |||| |||||| |||||||    
T  24661902 agtaagtacttaggaggtgacattactaatattgagta--aaatctgctaaatctaggatgtaactagttattaattagggaaaca 24661985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 34488407 - 34488316
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatctt 111  Q
    ||||| ||||||||||||||| ||||||| |   ||||  || ||||||||| ||||||||||||| |||| |||||| |||||||||| ||||    
T  34488407 agtaaatacttaggaggtgacattactaatattcagta--aaatctgctgaacctaggatgtaactagttattaattagggaaacaagtgtctt 34488316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 25401655 - 25401788
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtat---cttgaa 114  Q
    ||||||||||||||||||||| ||||||| |  |||||  || | |||| || |||||| ||| || |||| ||||||| |||| ||||||   ||||||    
T  25401655 agtaagtacttaggaggtgacattactaatattgagta--aaatttgctaaacctaggaggtagctagttaataattaaagaaagaagtatctgcttgaa 25401752  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||||| | |||||| | |||||  |||||||||    
T  25401753 ggaaataactcgtagcctagtagaaaaattctctta 25401788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 18207588 - 18207674
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagt 106  Q
    ||||||||||||||||||||| ||| ||| |  |||||  || |||||| || ||| ||||||||| |||| |||||| ||||||||||    
T  18207588 agtaagtacttaggaggtgacattattaatattgagta--aaatctgctaaacctaagatgtaactagttattaattagggaaacaagt 18207674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 17470650 - 17470690
Alignment:
Q  66 tgaatctaggatgtaactggttagtaattaaggaaacaagt 106  Q
    ||||||||||||||||||  ||| |||||||||||||||||    
T  17470650 tgaatctaggatgtaactaattattaattaaggaaacaagt 17470690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 102725 - 102860
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    |||| |||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||  ||   | ||    
T  102725 agtaggtacttaggaggtgacattactaagactgagtagtaactctgttgaacctaggatgtaactggttagtaattagggaaacaagtgcctagctaaa 102824  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||| ||| |||||| ||||||||||||||||||    
T  102825 ggaaatcagtcgtagcctaatagaaccattctctta 102860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 1847625 - 1847760
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagta---tcttgaa 114  Q
    ||||||||| ||||||||||| ||||||| |  |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||   |||||||    
T  1847625 agtaagtacataggaggtgacattactaaaattgagtagtaactctgttgaacctaggatgtaactgattagtaattaaggaaacaagtatcttcttgaa 1847724  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    | |||||||||||||||  |||||| ||||||||||    
T  1847725 gaaaataagttgtagcctcatagaatcattctctta 1847760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 39272487 - 39272622
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtat---cttgaa 114  Q
    ||||||||||||||| ||||| ||||||| || ||||||||||||||||||| |||| |||||||| |||| ||||||||||||||| |||    || ||    
T  39272487 agtaagtacttaggaagtgacattactaacactgagtagtaactctgctgaacctagtatgtaactagttaataattaaggaaacaaatatatgtttaaa 39272586  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    ||||||||||  ||||| |||||||||||| |||||    
T  39272587 ggaaataagtcatagcctaatagaaccattatctta 39272622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 13759289 - 13759381
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct 110  Q
    ||||||||||||||||||||| ||||||| |  ||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||    
T  13759289 agtaagtacttaggaggtgacattactaatattgagtagtaactctgctgaacctaggatgtaacaggttagtaattagggaaacaagcatct 13759381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 3326917 - 3327004
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    |||||||| |||||||||||  |||||||||| |||||||||||||||  || |||||||||||||||||||||||||||||||||||    
T  3326917 agtaagtatttaggaggtgaaattactaagactgagtagtaactctgccaaacctaggatgtaactggttagtaattaaggaaacaag 3327004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 6043207 - 6043120
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    |||||||||||||| |||||| |||||||||  |||||||||||||||| || |||||||| ||||||||||||||||||||||||||    
T  6043207 agtaagtacttaggtggtgacattactaagattgagtagtaactctgctaaacctaggatgcaactggttagtaattaaggaaacaag 6043120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 8978332 - 8978415
Alignment:
Q  22 agtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||||||||||||  |||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||    
T  8978332 agtacttaggaggtgagattactaagactgagtagtaaatctgctgaacctaggatgtaactagttagtaattaaggaaacaag 8978415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 105
Target Start/End: Complemental strand, 2564640 - 2564555
Alignment:
Q  20 taagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    |||||||||||||| |||| |||||||||| |||| ||||||||||| || |||||||||||||| ||||||||||||||||||||    
T  2564640 taagtacttaggagctgacattactaagactgagtggtaactctgctaaacctaggatgtaactgattagtaattaaggaaacaag 2564555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 4819624 - 4819491
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    |||||||||| |||||||||| ||||||| |  |||||  || | |||| || |||||| |||||| |||| ||||||||||||||||| |||   ||||    
T  4819624 agtaagtactaaggaggtgacattactaatattgagta--aaatttgctaaacctaggaggtaactagttaataattaaggaaacaagtgtctgcttgaa 4819527  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||||||| |||||| | ||||| ||||||||||    
T  4819526 ggaaataagtcgtagcctagtagaaacattctctta 4819491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 10941807 - 10941940
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtat---cttgaa 114  Q
    ||||||||||||||||||||  ||||| | |  |||||  || |||| |||| | |||| |||||| |||| ||||||||||||||||| |   ||||||    
T  10941807 agtaagtacttaggaggtgatattactgatattgagta--aaatctgttgaaccaaggaggtaactagttaataattaaggaaacaagtgtttgcttgaa 10941904  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    ||||||||||||||||| |  |||||||||||||||    
T  10941905 ggaaataagttgtagcctagcagaaccattctctta 10941940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 4786580 - 4786447
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    |||||||||| |||||||||| ||||||| |  |||||  || | ||||||| ||||||  ||| | |||| ||||||||||||||||| |||   ||||    
T  4786580 agtaagtactaaggaggtgacattactaatattgagta--aaatttgctgaacctaggagataattagttaataattaaggaaacaagtgtctgcttgaa 4786483  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||||||| |||||| | ||||| ||||||||||    
T  4786482 ggaaataagtcgtagcctagtagaaacattctctta 4786447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 9730937 - 9731022
Alignment:
Q  19 gtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagt 106  Q
    |||||||||||||||||||| ||||||| |  |||||  || ||||||||  |||||| |||||| |||| |||||||||||||||||    
T  9730937 gtaagtacttaggaggtgacattactaatattgagta--aaatctgctgagcctaggaggtaactagttaataattaaggaaacaagt 9731022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 21233232 - 21233146
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagt 106  Q
    ||||||||||||||||||||| | ||||| |  |||||  || | |||||||  |||||||||||| |||||||||||| |||||||||    
T  21233232 agtaagtacttaggaggtgacataactaatattgagta--aaatttgctgaaagtaggatgtaactagttagtaattaacgaaacaagt 21233146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 18366326 - 18366399
Alignment:
Q  79 taactggttagtaattaaggaaacaagtatct---tgaaggaaataagttgtagccaaatagaaccattctctt 149  Q
    ||||||||||||||||| ||||||||||  ||   ||||||||||| |||||| || ||||||||||| |||||    
T  18366326 taactggttagtaattagggaaacaagtgcctaactgaaggaaatatgttgtaacctaatagaaccatactctt 18366399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 2348311 - 2348379
Alignment:
Q  85 gttagtaattaaggaaacaagtatct---tgaaggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||| |||||||| |||||||| |||   ||||||||||||||  ||||| ||||||||||||||||||    
T  2348311 gttaataattaagaaaacaagtgtctgcttgaaggaaataagtcatagcctaatagaaccattctctta 2348379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 9313181 - 9313102
Alignment:
Q  20 taagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaa 101  Q
    |||||| |||||||||||| ||||||| || |||||  || ||||||||| ||| ||||||||| |||| |||||| |||||    
T  9313181 taagtatttaggaggtgacattactaatactgagta--aaatctgctgaacctaagatgtaactagttattaattagggaaa 9313102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 8053507 - 8053577
Alignment:
Q  82 ctggttagtaattaaggaaacaagtatct---tgaaggaaataagttgtagccaaatagaaccattctctt 149  Q
    |||||||||||||| ||||||||||  ||   |||||||||||||| ||| |  |||||||||||||||||    
T  8053507 ctggttagtaattagggaaacaagtgcctagctgaaggaaataagtcgtaacttaatagaaccattctctt 8053577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 12330127 - 12330042
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||||||||||||||||| ||| ||| ||  ||||  || ||| ||||| ||| || |||||| |||||| ||||||||||||||    
T  12330127 agtaagtacttaggaggtgacattaataatacgcagta--aaatctactgaacctatgaggtaactagttagtgattaaggaaacaag 12330042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0638 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 146 - 233
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    |||||||||||||||||| || ||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  146 agtaagtacttaggaggttacattactaagacgaagtagtaactctgctgaaactaggatgtaactggttagtaattaaggaaacaag 233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 9517504 - 9517370
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    ||||||||||||| ||||||  |||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||  |   | ||    
T  9517504 agtaagtacttagcaggtgatattactaagactgagtagtaactttgctgaacctaggatgtaactggttagtaattagggaaacaaatacatatctaaa 9517405  T
Q  115 ggaaataagttgtagccaaatagaaccattctctt 149  Q
    ||||||||| ||||||| ||||||||| |||||||    
T  9517404 ggaaataaggtgtagcctaatagaacctttctctt 9517370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 20144426 - 20144534
Alignment:
Q  19 gtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagta---tcttgaag 115  Q
    |||||||||||||||||||| ||||||||||  |||||||| ||||||||| |||||||||||| ||||| ||||||||||||||||||    |||||||    
T  20144426 gtaagtacttaggaggtgacattactaagactaagtagtaattctgctgaacctaggatgtaaccggttaataattaaggaaacaagtacttgcttgaag 20144525  T
Q  116 gaaataagt 124  Q
    |||||||||    
T  20144526 gaaataagt 20144534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 22188413 - 22188305
Alignment:
Q  19 gtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagta---tcttgaag 115  Q
    |||||||||||||||||||| ||||||||||  |||||||| ||||||||| |||||||||||| ||||| ||||||||||||||||||    |||||||    
T  22188413 gtaagtacttaggaggtgacattactaagactaagtagtaattctgctgaacctaggatgtaaccggttaataattaaggaaacaagtacttgcttgaag 22188314  T
Q  116 gaaataagt 124  Q
    |||||||||    
T  22188313 gaaataagt 22188305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 14638339 - 14638204
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagta---tcttgaa 114  Q
    |||||||| ||| |||||||| |||||||  |  |||  |||||||| |||| |||||||||||||| ||||||||||||||||||| ||   |||||||    
T  14638339 agtaagtatttaagaggtgacattactaatgcaaagtgataactctgttgaacctaggatgtaactgattagtaattaaggaaacaattattttcttgaa 14638240  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||||| | |||| | ||||||||||||||||||    
T  14638239 ggaaataactcgtagtctaatagaaccattctctta 14638204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 1635759 - 1635627
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    ||||| ||||||||||||||| ||||||| |  |||||  || ||||||||| ||| || |||||| |||| ||||||||||||||||| |||   ||||    
T  1635759 agtaactacttaggaggtgacattactaatattgagta--aaatctgctgaacctatgaggtaactagtta-taattaaggaaacaagtctctccttgaa 1635663  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    | ||||||||||||||| | || || ||||||||||    
T  1635662 gaaaataagttgtagcctagtataatcattctctta 1635627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 22409651 - 22409780
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtat---cttgaa 114  Q
    |||||||||||| |||||||| ||||||| ||   |||  || ||| ||||||||| || |||||| |||| |||||||||||||||||||   ||||||    
T  22409651 agtaagtacttaagaggtgacattactaatactacgta--aaatctactgaatctatgacgtaactagttaataattaaggaaacaagtatttgcttgaa 22409748  T
Q  115 ggaaataagttgtagccaaatagaaccattct 146  Q
    | |||||||| |||||| | ||| ||||||||    
T  22409749 gtaaataagtcgtagcctactagtaccattct 22409780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 18074687 - 18074772
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||||||||||||||||| ||||||| ||| ||||  || ||||||||| || |||| ||||| |||||| || |||||||||||    
T  18074687 agtaagtacttaggaggtgacattactaataccaagta--aaatctgctgaacctgggatttaactagttagtgatgaaggaaacaag 18074772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 2587428 - 2587385
Alignment:
Q  63 tgctgaatctaggatgtaactggttagtaattaaggaaacaagt 106  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||    
T  2587428 tgctgaaaccaggatgtaactagttagtaattaaggaaacaagt 2587385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 24479003 - 24478922
Alignment:
Q  71 ctaggatgtaactggttagtaattaaggaaacaagta---tcttgaaggaaataagttgtagccaaatagaaccattctctt 149  Q
    |||||||||||||   |||||||||||||||||| ||   |||||||||||||||| | ||||| ||||||| | |||||||    
T  24479003 ctaggatgtaactcaatagtaattaaggaaacaattaccttcttgaaggaaataagctatagcctaatagaatcgttctctt 24478922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 4340517 - 4340412
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagt---atcttgaa 114  Q
    |||| ||||||| |||||| | ||||||| || |||||  || ||||||||| ||||||||||||| || || ||||||| ||||||||    |||||||    
T  4340517 agtatgtacttaagaggtgtcattactaatactgagta--aaatctgctgaacctaggatgtaactagtgagaaattaagaaaacaagtgacttcttgaa 4340420  T
Q  115 ggaaataa 122  Q
    ||||||||    
T  4340419 ggaaataa 4340412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 8245702 - 8245615
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagta 107  Q
    ||||| ||||||||||||||| ||||||| |  |||||  || |||||| || ||||||||||||| |||  |||||| |||||||||||    
T  8245702 agtaaatacttaggaggtgaccttactaatattgagta--aaatctgctaaacctaggatgtaactagtttttaattagggaaacaagta 8245615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 17883477 - 17883550
Alignment:
Q  17 cagtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagta 91  Q
    ||||| |||||||||||||||| ||| ||||||  ||| ||  |||| ||||| |||||||||||||||||||||    
T  17883477 cagtaggtacttaggaggtgacattattaagactaagtggtg-ctctactgaacctaggatgtaactggttagta 17883550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 24216298 - 24216212
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagt 106  Q
    |||||||||| |||||||||| | ||||| |  |||||  || |||||||||   |||| |||||| ||||||||||||||||||||||    
T  24216298 agtaagtactgaggaggtgacataactaatattgagta--aaatctgctgaaagcaggaggtaactagttagtaattaaggaaacaagt 24216212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 17382696 - 17382668
Alignment:
Q  79 taactggttagtaattaaggaaacaagta 107  Q
    |||||||||||||||||||||||||||||    
T  17382696 taactggttagtaattaaggaaacaagta 17382668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 31804135 - 31804268
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagta---tcttgaa 114  Q
    ||||||||||||| ||||||| ||| ||| ||||||||  || ||||||||| |||||| |||||| |||||||||||||||||||||||    ||||||    
T  31804135 agtaagtacttagaaggtgacattaataataccgagta--aaatctgctgaacctaggaggtaactagttagtaattaaggaaacaagtacctacttgaa 31804232  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||||||| |||||| ||||||| ||||||||||    
T  31804233 ggaaataagtcgtagcctaatagaatcattctctta 31804268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 27908502 - 27908637
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    |||||||||||| || ||||| |||| ||||| |||||||||||| || ||| |||||||||||||||||| |||||||||||||||||  ||   | ||    
T  27908502 agtaagtacttatgatgtgacattacaaagactgagtagtaactcagcggaacctaggatgtaactggttattaattaaggaaacaagttcctagctaaa 27908601  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    ||||||||||||||||| ||||||| | ||||||||    
T  27908602 ggaaataagttgtagcctaatagaatcgttctctta 27908637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 17675019 - 17675106
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||| ||||||||||||||| |||||||||| ||||||||||  |||| || |||||||||||||||||||||| || |||||||||    
T  17675019 agtaactacttaggaggtgacattactaagactgagtagtaacgttgcttaacctaggatgtaactggttagtaaatagggaaacaag 17675106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 27541235 - 27541322
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    |||||||||||| |||||||| |||||||||| |||| |||||||||||||| ||||||||||| || ||| |||||| |||||||||    
T  27541235 agtaagtacttatgaggtgacattactaagactgagtggtaactctgctgaacctaggatgtaattgattactaattatggaaacaag 27541322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 13777200 - 13777091
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtat---cttgaa 114  Q
    ||||||||||||||||||||| |||||||||| |||||  || ||||||||| |||||| |||||| |||||  |||||||||||||||     ||||||    
T  13777200 agtaagtacttaggaggtgacattactaagactgagta--aaatctgctgaacctaggaggtaactagttagagattaaggaaacaagtggttgcttgaa 13777103  T
Q  115 ggaaataagttg 126  Q
    ||||||||||||    
T  13777102 ggaaataagttg 13777091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 17629711 - 17629798
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||| ||||||||||||||| |||||||||| ||||||||||  |||| || ||||||||||| |||||||||| || | |||||||    
T  17629711 agtaactacttaggaggtgacattactaagactgagtagtaacgttgcttaacctaggatgtaattggttagtaaataggtaaacaag 17629798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 25887220 - 25887352
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    ||||||||||||||||||||| ||||||| |  |||||   | | || |||| |||||| |||||| |||| |||||||||| ||| || |||   ||||    
T  25887220 agtaagtacttaggaggtgacattactaatatggagta---aatttgatgaacctaggaggtaactagttaataattaaggagacacgtgtctgcttgaa 25887316  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    ||||||||||||||||| | ||||||||||||||||    
T  25887317 ggaaataagttgtagcctagtagaaccattctctta 25887352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 28929408 - 28929329
Alignment:
Q  26 cttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||||||||| |||||||||  ||| ||||||| ||||||| ||| |||||||||  ||||||||||||||||||||    
T  28929408 cttaggaggtgacattactaagattgagcagtaactttgctgaacctatgatgtaactacttagtaattaaggaaacaag 28929329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 15340021 - 15339888
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagta---tcttgaa 114  Q
    |||||||| |||||||||||| | ||||| ||  ||||  || ||||||||| ||||||||||| | |||| ||||||||||||||| ||    ||||||    
T  15340021 agtaagtatttaggaggtgacatgactaatactaagta--aaatctgctgaacctaggatgtaaatagttattaattaaggaaacaaatacctacttgaa 15339924  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||||||  |||||| |||||||| |||||||||    
T  15339923 ggaaataagccgtagcctaatagaacaattctctta 15339888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 30412375 - 30412247
Alignment:
Q  23 gtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaaggaaa 119  Q
    ||||||| ||| |||| |||||||||| |||| ||  |||| | ||| ||||||||||||| ||||||||||| | ||||||||  ||   | |||||||    
T  30412375 gtacttaagagatgacattactaagactgagtggtg-ctctaccgaacctaggatgtaactagttagtaattaggtaaacaagtgcctaactaaaggaaa 30412277  T
Q  120 taagttgtagccaaatagaaccattctctt 149  Q
    ||| |||||||| |||||||||||||||||    
T  30412276 taatttgtagcctaatagaaccattctctt 30412247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 12950384 - 12950470
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagt 106  Q
    |||||||| |||||||| ||| ||||||| || |||||  || | || |||| |||||| |||||| ||||||||||||||||||||||    
T  12950384 agtaagtatttaggaggcgacattactaatactgagta--aaatatgttgaacctaggaggtaacttgttagtaattaaggaaacaagt 12950470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 107
Target Start/End: Original strand, 16075825 - 16075859
Alignment:
Q  73 aggatgtaactggttagtaattaaggaaacaagta 107  Q
    ||||||||||| |||||||||||||||||||||||    
T  16075825 aggatgtaactagttagtaattaaggaaacaagta 16075859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 17350080 - 17350036
Alignment:
Q  61 tctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    |||||||||  ||||| |||||| |||||||||||||||||||||    
T  17350080 tctgctgaacttaggaggtaactagttagtaattaaggaaacaag 17350036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 16179779 - 16179692
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||    
T  16179779 agtaagtacttaggaggtgaaattactaagactgagtagtaactctgctgaacctaggatgtaacttgttagtaattagggaatcaag 16179692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 15159910 - 15159983
Alignment:
Q  79 taactggttagtaattaaggaaacaagtatct---tgaaggaaataagttgtagccaaatagaaccattctctt 149  Q
    ||||||||||||||||| ||||||||||| ||   |||||||||||||||||| || |||| ||||||||||||    
T  15159910 taactggttagtaattagggaaacaagtacctagttgaaggaaataagttgtaacctaatataaccattctctt 15159983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 21449847 - 21449767
Alignment:
Q  23 gtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaa 104  Q
    ||||||||||| |||| |||||||||| |||| ||  |||| | ||| ||||||||||||||||||||||||| ||||||||    
T  21449847 gtacttaggagatgacattactaagactgagtggtg-ctctaccgaacctaggatgtaactggttagtaattagggaaacaa 21449767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 31235287 - 31235372
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||| ||||||||||||||| |||| || || |||||  || ||||||||  |||||| |||||| |||||||||||||||||||||    
T  31235287 agtaaatacttaggaggtgacattaccaatactgagta--aaatctgctgagcctaggaggtaactagttagtaattaaggaaacaag 31235372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 9402363 - 9402279
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaa 104  Q
    ||||||||||||||||||||| ||||||| ||  ||||  || | ||||||| |||||| || ||| ||||||||||||||||||||    
T  9402363 agtaagtacttaggaggtgacattactaatactaagta--aaatttgctgaacctaggaggtgactagttagtaattaaggaaacaa 9402279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 15572750 - 15572837
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagta 107  Q
    ||||||||||||||||||||| ||||||| || |||||  || | || |||| |||| |||||||| |||| |||||| |||||||||||    
T  15572750 agtaagtacttaggaggtgacattactaatacagagta--aaatttgttgaacctagtatgtaactagttattaattagggaaacaagta 15572837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 26648361 - 26648489
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagta---tcttgaa 114  Q
    ||||||||||| ||||||||| |||||||||| |||||  || ||||||||| | | || |||||| |||||  |||| |||||||||||    ||||||    
T  26648361 agtaagtactttggaggtgacattactaagactgagta--aaatctgctgaaccaaagaggtaactagttagagattagggaaacaagtagttgcttgaa 26648458  T
Q  115 ggaaataagttgtagccaaatagaaccattc 145  Q
    |||||||| ||| | || || ||||||||||    
T  26648459 ggaaataaattgaaacctaacagaaccattc 26648489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 28008839 - 28008780
Alignment:
Q  66 tgaatctaggatgtaactggttagtaattaaggaaacaagt---atcttgaaggaaataa 122  Q
    |||||||||||||||||| ||||| ||||||||||||||||    |||||||||||||||    
T  28008839 tgaatctaggatgtaactagttagaaattaaggaaacaagtgacttcttgaaggaaataa 28008780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 15543359 - 15543488
Alignment:
Q  23 gtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatcttg---aaggaaa 119  Q
    |||||||||||||||| |||||||||  |||| ||  ||||   ||| ||| |||||||||| |||||||||| | ||| |||| ||| |   |||||||    
T  15543359 gtacttaggaggtgacattactaagattgagtggtg-ctctatcgaacctaagatgtaactgattagtaattaggtaaataagtgtctagctaaaggaaa 15543457  T
Q  120 taagttgtagccaaatagaaccattctctta 150  Q
    ||||| |||||| |||| |||||||||||||    
T  15543458 taagtcgtagcctaataaaaccattctctta 15543488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 16112486 - 16112401
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||||||||| || | || ||||||| ||||||||  || ||| ||||| ||||||||||||| |||| |||||| |||||||||    
T  16112486 agtaagtacttagaagtttacattactaataccgagta--aaatctactgaacctaggatgtaactagttattaattagggaaacaag 16112401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 33191447 - 33191362
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||| ||||||||||||||| ||||||| || |||||  || | || |||| ||||||||||||| |||| |||||| |||||||||    
T  33191447 agtaaatacttaggaggtgacattactaatactgagta--aaatatgttgaacctaggatgtaactagttattaattagggaaacaag 33191362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 44796145 - 44796018
Alignment:
Q  20 taagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag---tatcttgaagg 116  Q
    ||||||||| ||||||||| |||||||||| | |||  || |||||||||  ||||| |||||| |||||  ||||||||||||||   |  ||||||||    
T  44796145 taagtacttcggaggtgacattactaagactgggta--aaatctgctgaacttaggaggtaactagttagagattaaggaaacaagcggttgcttgaagg 44796048  T
Q  117 aaataagttgtagccaaatagaaccattct 146  Q
    ||||||  || | || ||||||||||||||    
T  44796047 aaataaaatgaaacctaatagaaccattct 44796018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 15812477 - 15812561
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaa 104  Q
    |||||||||||||||||| || |||||||||| |||||  || ||||||||| ||||||  ||||| |||||  |||| ||||||||    
T  15812477 agtaagtacttaggaggtaacattactaagactgagta--aaatctgctgaacctaggagataactagttagagattacggaaacaa 15812561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 13266908 - 13266845
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaact 83  Q
    ||||||||||||||||||||| ||||||| ||  ||||  || ||||||||| |||||||||||||    
T  13266908 agtaagtacttaggaggtgactttactaatacttagta--aaatctgctgaaactaggatgtaact 13266845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 16113614 - 16113581
Alignment:
Q  73 aggatgtaactggttagtaattaaggaaacaagt 106  Q
    ||||||||||| ||||||||||||||||||||||    
T  16113614 aggatgtaactagttagtaattaaggaaacaagt 16113581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 72805 - 72697
Alignment:
Q  19 gtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagta---tcttgaag 115  Q
    ||||||||||||||| |||| ||||||||||  |||||||||||| ||||| |||||||||||| ||||| ||||||||||||||||||    |||||||    
T  72805 gtaagtacttaggagctgacattactaagactaagtagtaactctcctgaacctaggatgtaaccggttaataattaaggaaacaagtacctgcttgaag 72706  T
Q  116 gaaataagt 124  Q
    |||||||||    
T  72705 gaaataagt 72697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 19171182 - 19171315
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    |||||||| |||||||||||| ||| ||| ||||||||  || ||||||||| |||||| |||||| ||||||||||| | ||||||||| ||   ||||    
T  19171182 agtaagtatttaggaggtgacattagtaataccgagta--aaatctgctgaacctaggaggtaactagttagtaattacgaaaacaagtacctacttgaa 19171279  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    ||| ||||||||||||| ||||||||||||||||||    
T  19171280 ggagataagttgtagcctaatagaaccattctctta 19171315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 16245046 - 16245179
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtat---cttgaa 114  Q
    ||||||||||||||||||||| ||||||| |  |||||  || | ||||||| |||||| |||||| |||| |||||||||||| |||| |   ||||||    
T  16245046 agtaagtacttaggaggtgacattactaatattgagta--aaatatgctgaacctaggaggtaactagttaataattaaggaaataagtgtttacttgaa 16245143  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||||||||||| || | || |||||||||||||    
T  16245144 ggaaataagttgtatcctagtataaccattctctta 16245179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 19910172 - 19910111
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgt 79  Q
    ||||||||||||| |||| || |||||||||| ||||||||||||||||||| |||||||||    
T  19910172 agtaagtacttagaaggttacattactaagactgagtagtaactctgctgaacctaggatgt 19910111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 2166992 - 2167125
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    |||||||||||| |||||||| ||||||| |  || ||  || | ||||||| |||||| |||||| |||| |||||||||| ||||||  ||   ||||    
T  2166992 agtaagtacttaagaggtgacattactaatattgacta--aaatttgctgaacctaggaggtaactagttaataattaaggacacaagttcctgcttgaa 2167089  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    ||||||||||||||||| | || |||||||||||||    
T  2167090 ggaaataagttgtagcctagtaaaaccattctctta 2167125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 150
Target Start/End: Original strand, 12772288 - 12772376
Alignment:
Q  65 ctgaatctaggatgtaactggttagtaattaaggaaacaagtat---cttgaaggaaataagttgtagccaaatagaaccattctctta 150  Q
    ||||| |||||| |||||| |||| |||||||||||| || | |   ||||||||||||||||||||||| | ||||||||||||||||    
T  12772288 ctgaacctaggaggtaactagttaataattaaggaaagaactgtctgcttgaaggaaataagttgtagcctagtagaaccattctctta 12772376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 41509237 - 41509104
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    ||||||||||||||||||||| ||||||| |  || ||  || | || ||||  ||||| |||| | |||| ||||||||||||||||| |||   ||||    
T  41509237 agtaagtacttaggaggtgacattactaatattgaata--aaatttgttgaacataggaggtaattagttaataattaaggaaacaagtgtctgcttgaa 41509140  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||||||| || ||| ||||||||||||||||||    
T  41509139 ggaaataagtcgtggcctaatagaaccattctctta 41509104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 21302676 - 21302603
Alignment:
Q  32 aggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||| |||||||||| |||||||||||||||  || ||| ||||||| || || |||||||||||||||||    
T  21302676 aggtgacattactaagactgagtagtaactctgccaaacctaagatgtaattgtttggtaattaaggaaacaag 21302603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 18458253 - 18458318
Alignment:
Q  85 gttagtaattaaggaaacaagtatct---tgaaggaaataagttgtagccaaatagaaccattctc 147  Q
    ||||||||||| |||||||||| |||   |||||||||||||||||| || |||||||||||||||    
T  18458253 gttagtaattagggaaacaagtgtctagctgaaggaaataagttgtaacctaatagaaccattctc 18458318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 9781234 - 9781366
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag---tatcttgaa 114  Q
    ||||||||||||||||||||| ||||||| ||||||||  || | || |||| |||  | |||| | |||| ||||||||| ||||||   |  ||||||    
T  9781234 agtaagtacttaggaggtgacattactaataccgagta--aaatatgttgaacctaaaaggtaattagtta-taattaagggaacaagtgcttgcttgaa 9781330  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    ||||||||||||||||| | ||| ||||||||||||    
T  9781331 ggaaataagttgtagcctagtaggaccattctctta 9781366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 5509111 - 5508982
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtat---cttgaa 114  Q
    ||||||||||||||||||||| ||||||| |  |||||  || ||||||||| |||| | |||||| |||||  |||| ||||||||||     ||||||    
T  5509111 agtaagtacttaggaggtgacattactaatattgagta--aaatctgctgaacctagaaggtaactagttagagattagggaaacaagtggttgcttgaa 5509014  T
Q  115 ggaaataagttgtagccaaatagaaccattctc 147  Q
    ||||||||||| || || |||||||| ||||||    
T  5509013 ggaaataagtttta-cctaatagaacaattctc 5508982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 3115744 - 3115870
Alignment:
Q  21 aagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaa---gtatcttgaagga 117  Q
    |||||||||||| ||||| ||||||| |  |||||  || ||||||||| ||| || |||||| |||||  |||||||||||||   ||  |||||||||    
T  3115744 aagtacttaggacgtgacattactaatattgagta--aaatctgctgaacctatgaggtaactagttagatattaaggaaacaaatggttgcttgaagga 3115841  T
Q  118 aataagttgtagccaaatagaaccattctc 147  Q
    ||||||||| | || |||||||| ||||||    
T  3115842 aataagttg-aacctaatagaacgattctc 3115870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 7583070 - 7582988
Alignment:
Q  22 agtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaa 104  Q
    ||||||||||||||||  |||||||||| ||||||||| || |||||| ||| ||||||||||||||||||||||||||||||    
T  7583070 agtacttaggaggtgagattactaagactgagtagtaaatcagctgaacctatgatgtaactggttagtaattaaggaaacaa 7582988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 17107364 - 17107278
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||   ||||| |||||||||||||    
T  17107364 agtaagtacttaggaggtgacattactaatactgagtagtaactctgctgaacctaggatgtaact-actagtagttaaggaaacaag 17107278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 17217623 - 17217495
Alignment:
Q  23 gtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaaggaaa 119  Q
    |||||||||||||||| |||||||||  |||| ||  |||| | ||| ||||||||||||||||| ||||||| ||||||||||  ||   | |||||||    
T  17217623 gtacttaggaggtgacattactaagattgagtggtg-ctctaccgaacctaggatgtaactggtttgtaattagggaaacaagtgcctaactaaaggaaa 17217525  T
Q  120 taagttgtagccaaatagaaccattctctt 149  Q
    ||||| ||||||  ||||||||||||||||    
T  17217524 taagtcgtagcctgatagaaccattctctt 17217495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 19635869 - 19636002
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatcttg---aa 114  Q
    ||||||||||||||||||||| ||||||| |  |||||  || | || ||||  ||||| |||||| |||  ||||||||||||||||| |||||   ||    
T  19635869 agtaagtacttaggaggtgacattactaatattgagta--aaatttgttgaacttaggaggtaactagtttataattaaggaaacaagtgtcttgttgaa 19635966  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    |||||||||| |||||| | ||||||||||||||||    
T  19635967 ggaaataagtcgtagcctagtagaaccattctctta 19636002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 11781117 - 11780984
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatct---tgaa 114  Q
    ||||||||||||||||||||| ||||||| |  ||||| ||| | || ||||  || || |||||  |||| ||||||||||||||||| |||   ||||    
T  11781117 agtaagtacttaggaggtgacattactaatattgagta-taa-tatggtgaacatatgaagtaacaagttaataattaaggaaacaagtgtctccttgaa 11781020  T
Q  115 ggaaataagttgtagccaaatagaaccattctctta 150  Q
    ||||||||||||||||| | ||||||||||||||||    
T  11781019 ggaaataagttgtagcctagtagaaccattctctta 11780984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 24638788 - 24638916
Alignment:
Q  24 tacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttag-taattaaggaaacaagtatct---tgaaggaaa 119  Q
    ||||||||||||||| ||||||| |  |||||  || | ||||||| |||||| |||||| ||||  ||||||||||||||||| |||   |||||||||    
T  24638788 tacttaggaggtgacattactaatattgagta--aaatttgctgaacctaggaggtaactagttaaataattaaggaaacaagtgtctgcttgaaggaaa 24638885  T
Q  120 taagttgtagccaaatagaaccattctctta 150  Q
    |||||||| ||| | ||||||||||||||||    
T  24638886 taagttgttgcctagtagaaccattctctta 24638916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 25024189 - 25024103
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagt 106  Q
    ||||||||||||||||||||| ||||||| |  |||||  || ||||||||| ||| ||||||||| |||| |||||||||||||||||    
T  25024189 agtaagtacttaggaggtgacattactaatattgagta--aaatctgctgaacctatgatgtaactagttattaattaaggaaacaagt 25024103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 19093077 - 19092992
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    ||||||||||||||||||||| ||||||| || |||||  || |||| ||||  |||||||||||| |||| |||||| |||||||||    
T  19093077 agtaagtacttaggaggtgacattactaatactgagta--aaatctgttgaacataggatgtaactagttattaattagggaaacaag 19092992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 13692127 - 13692196
Alignment:
Q  83 tggttagtaattaaggaaacaagtatct---tgaaggaaataagttgtagccaaatagaaccattctctt 149  Q
    ||||||||||||| |||||||||| |||   ||||||||||||||||||||| |||| || |||||||||    
T  13692127 tggttagtaattagggaaacaagtgtctagctgaaggaaataagttgtagcctaatataatcattctctt 13692196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 15165499 - 15165457
Alignment:
Q  62 ctgctgaatctaggatgtaactggttagtaattaaggaaacaa 104  Q
    |||||||| ||||||| ||||||||||||||||||||||||||    
T  15165499 ctgctgaacctaggatataactggttagtaattaaggaaacaa 15165457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 5956726 - 5956641
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    |||||||||||| |||||||| ||| ||| | ||||||  || | || |||| ||||||||||||| |||| ||||||||||||||||    
T  5956726 agtaagtacttaagaggtgacattattaatatcgagta--aaatttgttgaagctaggatgtaactagttattaattaaggaaacaag 5956641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 19604818 - 19604952
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtatctt---gaa 114  Q
    |||||||||| |||||||||| ||||||| |  |||||  || | || | || |||||| |||| | | ||||||||| |||||||||| |||    |||    
T  19604818 agtaagtactcaggaggtgacattactaatattgagta--aaatatgttaaacctaggaggtaattagctagtaattatggaaacaagtttctgctcgaa 19604915  T
Q  115 ggaaataagttgta-gccaaatagaaccattctctta 150  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  19604916 ggaaataagttgtaagcctaatagaaccattctctta 19604952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 81374 - 81242
Alignment:
Q  19 gtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaagtat---cttgaag 115  Q
    |||| ||||||| ||||||| ||||||| |  |||||  || |||||| |||||| || |||||| |||| ||||||||||||||||| |   |||||||    
T  81374 gtaattacttagaaggtgacattactaatattgagta--aaatctgctaaatctatgaggtaactagttaataattaaggaaacaagtgtttgcttgaag 81277  T
Q  116 gaaataagttgtagccaaatagaaccattctctta 150  Q
    ||||||||||||| || |||| |||||||||||||    
T  81276 gaaataagttgtaacctaataaaaccattctctta 81242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 55639 - 55553
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaact-ggttagtaattaaggaaacaag 105  Q
    ||||||||||||||||||||| ||||||| |  |||||  || ||||||||| ||||||||||||| | ||| |||||| |||||||||    
T  55639 agtaagtacttaggaggtgacattactaatattgagta--aaatctgctgaacctaggatgtaactagtttattaattagggaaacaag 55553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1156 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1156
Description:

Target: scaffold1156; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 306 - 230
Alignment:
Q  23 gtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaa 100  Q
    |||||||||||||||| |||||| ||  |||| ||  |||| | ||| ||||||||||||||||||||||||| ||||    
T  306 gtacttaggaggtgacattactaggaatgagttgtg-ctctaccgaacctaggatgtaactggttagtaattagggaa 230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 12036 - 11951
Alignment:
Q  18 agtaagtacttaggaggtgacgttactaagaccgagtagtaactctgctgaatctaggatgtaactggttagtaattaaggaaacaag 105  Q
    |||| ||||||||||||| || ||||||| || |||||  || | ||||||| || ||| |||||| |||||||||||||||| ||||    
T  12036 agtacgtacttaggaggtaacattactaatactgagta--aaatttgctgaacctcggaggtaactagttagtaattaaggaaccaag 11951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University