View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14075_low_7 (Length: 263)

Name: NF14075_low_7
Description: NF14075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14075_low_7
NF14075_low_7
[»] chr4 (11 HSPs)
chr4 (3-169)||(18723692-18723858)
chr4 (3-169)||(18731111-18731277)
chr4 (3-169)||(18655084-18655250)
chr4 (3-169)||(18699007-18699173)
chr4 (3-169)||(18679167-18679340)
chr4 (3-162)||(18074170-18074332)
chr4 (206-263)||(18679377-18679434)
chr4 (206-263)||(18723895-18723952)
chr4 (206-263)||(18699210-18699267)
chr4 (206-263)||(18731314-18731371)
chr4 (209-263)||(18655290-18655344)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-162)||(59978-60140)
[»] chr6 (28 HSPs)
chr6 (3-162)||(27427223-27427385)
chr6 (3-130)||(27604315-27604444)
chr6 (3-166)||(26802850-26803017)
chr6 (16-157)||(28781516-28781659)
chr6 (16-157)||(28786655-28786796)
chr6 (16-157)||(28792776-28792917)
chr6 (3-166)||(27592632-27592799)
chr6 (3-166)||(27679354-27679521)
chr6 (18-107)||(27698212-27698301)
chr6 (3-130)||(27706015-27706145)
chr6 (3-106)||(27677231-27677331)
chr6 (61-157)||(26646892-26646990)
chr6 (61-157)||(26752860-26752958)
chr6 (210-263)||(28786585-28786638)
chr6 (212-263)||(26646786-26646837)
chr6 (212-263)||(26752754-26752805)
chr6 (212-262)||(26884473-26884523)
chr6 (226-263)||(26861920-26861957)
chr6 (210-263)||(28781446-28781499)
chr6 (226-263)||(28792706-28792743)
chr6 (43-102)||(26056392-26056451)
chr6 (43-102)||(26076362-26076421)
chr6 (43-118)||(26143322-26143397)
chr6 (84-138)||(26824240-26824294)
chr6 (61-118)||(25483513-25483570)
chr6 (61-130)||(31284714-31284782)
chr6 (211-263)||(27337893-27337945)
chr6 (211-263)||(27398633-27398685)
[»] scaffold0419 (2 HSPs)
scaffold0419 (16-157)||(7902-8045)
scaffold0419 (210-263)||(7832-7885)
[»] scaffold0277 (4 HSPs)
scaffold0277 (16-157)||(13299-13442)
scaffold0277 (16-157)||(4336-4481)
scaffold0277 (210-263)||(4498-4551)
scaffold0277 (210-263)||(13459-13512)
[»] chr1 (6 HSPs)
chr1 (23-169)||(267977-268130)
chr1 (206-260)||(268167-268221)
chr1 (61-128)||(28164033-28164100)
chr1 (226-263)||(28127509-28127546)
chr1 (226-263)||(28164193-28164230)
chr1 (80-128)||(28127352-28127400)
[»] chr8 (1 HSPs)
chr8 (209-260)||(29273596-29273647)
[»] scaffold0349 (1 HSPs)
scaffold0349 (3-54)||(14084-14135)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 18723692 - 18723858
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18723692 catgtccaataagataagtcagtatgtaacaacatcacagtcacatccatttactcataatatatcatacatttctaactattttgacttataaataact 18723791  T
Q  103 aatacttgtttaaaaatgtaaataaaaaggtgtttccaatttaggctttaagatggtattattgagg 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18723792 aatacttgtttaaaaatgtaaataaaaaggtgtttccaatttaggctttaagatggtattactgagg 18723858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 18731111 - 18731277
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18731111 catgtccaataagataagtcagtatgtaacaacatcacagtcacatccatgtcctcataatatatcatacatttctaactattttgacttataaataact 18731210  T
Q  103 aatacttgtttaaaaatgtaaataaaaaggtgtttccaatttaggctttaagatggtattattgagg 169  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18731211 aatacttgtttaaaaatgtaaaaaaaaaggtgtttccaatttaggctttaagatggtattattgagg 18731277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 18655084 - 18655250
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||||||| || |||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18655084 catgtccaataagataaatcagtgtgtaacaacatcacagtcacatccatttactcataatatatcatacatttctaactattttgacttataaataact 18655183  T
Q  103 aatacttgtttaaaaatgtaaataaaaaggtgtttccaatttaggctttaagatggtattattgagg 169  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  18655184 aatacttgtttaaaaatgtaaataaaaaggtgtttcgaatttaggctttaagatggtatcattgagg 18655250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 18699007 - 18699173
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||||||| || |||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  18699007 catgtccaataagataaatcagtgtgtaacaacatcacagtcacatccatgtcctcatagtatatcatacatttctaactattttgacttataaataact 18699106  T
Q  103 aatacttgtttaaaaatgtaaataaaaaggtgtttccaatttaggctttaagatggtattattgagg 169  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  18699107 aatacttgtttaaaaacgtaattaaaaaggtgtttccaatttaggctttaagatggtatcattgagg 18699173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 18679167 - 18679340
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaa-------ctattttgacttata 95  Q
    ||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||    
T  18679167 catgtccaataagataagtcagtatgtaacaacatcacagtcacacccatgtactcataatatatcatacatttctaaattcaaactattttgacttata 18679266  T
Q  96 aataactaatacttgtttaaaaatgtaaataaaaaggtgtttccaatttaggctttaagatggtattattgagg 169  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | ||||||||||||||    
T  18679267 aataactaatacttgtttaaaaacgtaaataaaaaggtgtttccaatttaggctttcggttggtattattgagg 18679340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 18074332 - 18074170
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacag--tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataa 100  Q
    ||||||||| ||||||||| |||||||||||||||||||   ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  18074332 catgtccaataatataagttagtatgtaacaacatcacacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataa 18074233  T
Q  101 ctaatacttgtttaaaaatgtaaat-aaaaaggtgtttccaatttaggctttaagatggtatt 162  Q
    |||| | |||||||||||  ||||| ||||||||||| |  ||||||||||||||||||||||    
T  18074232 ctaacaattgtttaaaaacataaataaaaaaggtgttacacatttaggctttaagatggtatt 18074170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 18679377 - 18679434
Alignment:
Q  206 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18679377 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 18679434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 18723895 - 18723952
Alignment:
Q  206 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18723895 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 18723952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 18699210 - 18699267
Alignment:
Q  206 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18699210 caagaattaagtaaagaggagtacccagaactaaaatggtagccggacaagttagcag 18699267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 206 - 263
Target Start/End: Original strand, 18731314 - 18731371
Alignment:
Q  206 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18731314 caagaattaagtaaagaggagtacccatgactaaaatggtagccggacaagttagcag 18731371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 209 - 263
Target Start/End: Original strand, 18655290 - 18655344
Alignment:
Q  209 gaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  18655290 gaattaagtgaagaggagtacccaggactagaatggtagccggacaagttagcag 18655344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 3 - 162
Target Start/End: Complemental strand, 60140 - 59978
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacag--tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataa 100  Q
    ||||||||| ||||||||| |||||||||||||||||||   ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  60140 catgtccaataatataagttagtatgtaacaacatcacacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataa 60041  T
Q  101 ctaatacttgtttaaaaatgtaaat-aaaaaggtgtttccaatttaggctttaagatggtatt 162  Q
    |||| | |||||||||||  ||||| ||||||||||| |  ||||||||||||||||||||||    
T  60040 ctaacaattgtttaaaaacataaataaaaaaggtgttacacatttaggctttaagatggtatt 59978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 9e-45; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 27427223 - 27427385
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacag--tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataa 100  Q
    ||||||||| ||||||||| |||||||||||||||||||   ||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  27427223 catgtccaataatataagttagtatgtaacaacatcacacaatcacatccatgtactcataatatattatacatttttaactattttgacatataaataa 27427322  T
Q  101 ctaatacttgtttaaaaatgtaaat-aaaaaggtgtttccaatttaggctttaagatggtatt 162  Q
    |||| | |||||||||||  ||||| ||||||||||| |  ||||||||||||||||||||||    
T  27427323 ctaacaattgtttaaaaacataaataaaaaaggtgttacacatttaggctttaagatggtatt 27427385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 27604315 - 27604444
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtac--tcataatatatcatacatttctaactattttgacttataaataa 100  Q
    ||||||||| || |||||| ||||||||||||||||| | ||||||||||||||  ||| ||||||| |||||||||||||||||||||| |||||||||    
T  27604315 catgtccaataagataagttagtatgtaacaacatcataatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataa 27604414  T
Q  101 ctaatacttgtttaaaaatgtaaataaaaa 130  Q
    |||||||||||||||||| |||||||||||    
T  27604415 ctaatacttgtttaaaaacgtaaataaaaa 27604444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 26803017 - 26802850
Alignment:
Q  3 catgtccaagaatataagtcagtatgta---acaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaata 99  Q
    ||||||||| || |||||| ||||||||   ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||  || ||||||||    
T  26803017 catgtccaacaagataagttagtatgtactaacaacatcacaatcacatccatgtactcataatatattatacatttctaactatttcaacatataaata 26802918  T
Q  100 actaatacttgtttaaaaatgtaaataa-aaaggtgtttccaatttaggctttaagatggtattattg 166  Q
    ||||||||||||||||||| ||| |||| |||||| ||||| |||||  ||||||||||  |||||||    
T  26802917 actaatacttgtttaaaaacgtatataagaaaggtatttcccatttaacctttaagatgagattattg 26802850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 28781659 - 28781516
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact-aatacttgttta 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||| || |||||| | |||| |||||||    
T  28781659 ataagttagtatgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaataattgttta 28781560  T
Q  115 aaaatgtaaata-aaaaggtgtttccaatttaggctttaagatg 157  Q
    |||| ||||||| |||| |||||||| |||||||||||||||||    
T  28781559 aaaacgtaaatagaaaaagtgtttcccatttaggctttaagatg 28781516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 28786796 - 28786655
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact-aatacttgttta 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||| || |||||| | ||||||||||||    
T  28786796 ataagttagtatgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgttta 28786697  T
Q  115 aaaatgtaaata-aaaaggtgtttccaatttaggctttaagatg 157  Q
    |||| ||||||| |||||||||||||   |||||||||||||||    
T  28786696 aaaacgtaaatagaaaaggtgtttcc--cttaggctttaagatg 28786655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 28792917 - 28792776
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact-aatacttgttta 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||| || |||||| | ||||||||||||    
T  28792917 ataagttagtatgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataattaaatacttgttta 28792818  T
Q  115 aaaatgtaaata-aaaaggtgtttccaatttaggctttaagatg 157  Q
    |||| ||||||| |||||||||||||   |||||||||||||||    
T  28792817 aaaacgtaaatagaaaaggtgtttcc--cttaggctttaagatg 28792776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 166
Target Start/End: Original strand, 27592632 - 27592799
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||| ||| || |||||| ||| | ||||||||||||| ||||||||||||||| | ||| ||| |||||||||||||||||| ||| |||||||||||    
T  27592632 catgtgcaataagataagttagtgtctaacaacatcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataact 27592731  T
Q  103 aa---tacttgtttaaaaatgtaaat-aaaaaggtgtttccaatttaggctttaagatggtattattg 166  Q
    ||   ||||||||||||| |||| || |||||||| |||||  ||||  ||||||||||  |||||||    
T  27592732 aatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagattattg 27592799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 27679521 - 27679354
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||| ||| || |||||| ||| | ||||||||||||| ||||||||||||||| | ||| ||| |||||||||||||||||| ||| |||||||||||    
T  27679521 catgtgcaataagataagttagtgtctaacaacatcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataact 27679422  T
Q  103 aa---tacttgtttaaaaatgtaaat-aaaaaggtgtttccaatttaggctttaagatggtattattg 166  Q
    ||   ||||||||||||| |||| || |||||||| |||||  ||||  ||||||||||  |||||||    
T  27679421 aatagtacttgtttaaaactgtatataaaaaaggtatttcccttttaacctttaagatgagattattg 27679354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 27698212 - 27698301
Alignment:
Q  18 aagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataactaatac 107  Q
    |||| |||||| |||||||||||| ||||||| ||||||||| ||||||| ||| |||||||||||||| ||| ||||||||||||||||    
T  27698212 aagttagtatgaaacaacatcacaatcacatctatgtactcagaatatattataaatttctaactatttcgacatataaataactaatac 27698301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 27706015 - 27706145
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||| ||| || |||||| ||| | |||||||||| || ||||||||||||||| | ||| ||| || ||||||||||||||| ||| |||||||||||    
T  27706015 catgtgcaataagataagttagtgtctaacaacatcccaatcacatccatgtactaagaatgtattattcatttctaactatttcgacatataaataact 27706114  T
Q  103 aa---tacttgtttaaaaatgtaaataaaaa 130  Q
    ||   ||||||||||||| |||| |||||||    
T  27706115 aatagtacttgtttaaaactgtatataaaaa 27706145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 27677231 - 27677331
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||| ||| || |||||| ||| | ||||||||||||| |||||||||||||||   ||| ||| |||||||||||||||||| ||| |||||||||||    
T  27677231 catgtgcaataagataagttagtgtctaacaacatcacaatcacatccatgtact---aatgtattatacatttctaactatttcgacatataaataact 27677327  T
Q  103 aata 106  Q
    ||||    
T  27677328 aata 27677331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 26646990 - 26646892
Alignment:
Q  61 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaataaaa--aggtgtttccaatttaggctttaagatg 157  Q
    ||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||||||  | |||||||  | |||||||| ||||| |||||||||||    
T  26646990 aatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaatatgtgtttcctatttaagctttaagatg 26646892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 26752958 - 26752860
Alignment:
Q  61 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaataaaa--aggtgtttccaatttaggctttaagatg 157  Q
    ||||||| ||||| |||||||| ||||||| ||||||||| | |||||||||||||||  | |||||||  | |||||||| ||||| |||||||||||    
T  26752958 aatatattatacagttctaactcttttgacatataaataatttatacttgtttaaaaacattaataaaaatatgtgtttcctatttaagctttaagatg 26752860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 28786638 - 28786585
Alignment:
Q  210 aattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||||| ||  ||||||||||||| ||||||||||||||||||||||||    
T  28786638 aattaagtaaatagtcgtacccaggactagaatggtagccggacaagttagcag 28786585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 26646837 - 26646786
Alignment:
Q  212 ttaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    |||||||||| || ||||||||||||| ||||||| ||||||||||||||||    
T  26646837 ttaagtaaagtggggtacccaggactataatggtatccggacaagttagcag 26646786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 26752805 - 26752754
Alignment:
Q  212 ttaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    |||||||||| || ||||||||||||| ||||||| ||||||||||||||||    
T  26752805 ttaagtaaagtggggtacccaggactataatggtatccggacaagttagcag 26752754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 26884523 - 26884473
Alignment:
Q  212 ttaagtaaagaggagtacccaggactaaaatggtagccggacaagttagca 262  Q
    |||||||||| ||  |||||| |||||||||||||||||||||||||||||    
T  26884523 ttaagtaaagtgggatacccaagactaaaatggtagccggacaagttagca 26884473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 26861957 - 26861920
Alignment:
Q  226 gtacccaggactaaaatggtagccggacaagttagcag 263  Q
    |||||||||||||||||||||||| |||||||||||||    
T  26861957 gtacccaggactaaaatggtagcctgacaagttagcag 26861920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 28781499 - 28781446
Alignment:
Q  210 aattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    |||||||||||  |  ||||||||||||| ||||||||||||||||||||||||    
T  28781499 aattaagtaaattgtcgtacccaggactagaatggtagccggacaagttagcag 28781446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 28792743 - 28792706
Alignment:
Q  226 gtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  28792743 gtacccaggactagaatggtagccggacaagttagcag 28792706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 26056451 - 26056392
Alignment:
Q  43 tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||||||||||| | ||||||||| || || |||||||| ||||||| |||||||||||    
T  26056451 tcacatccatgtattgataatatattatgcaattctaacttttttgacatataaataact 26056392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 26076421 - 26076362
Alignment:
Q  43 tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact 102  Q
    ||||||||||||| | ||||||||| || || |||||||| ||||||| |||||||||||    
T  26076421 tcacatccatgtattgataatatattatgcaattctaacttttttgacatataaataact 26076362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 26143397 - 26143322
Alignment:
Q  43 tcacatccatgtactcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 118  Q
    ||||||||||||| | | ||||||| || || |||||||| ||||||| ||||||||||| | |||||||| ||||    
T  26143397 tcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttttaaaa 26143322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 138
Target Start/End: Complemental strand, 26824294 - 26824240
Alignment:
Q  84 ttttgacttataaataactaatacttgtttaaaaatgtaaataaaaaggtgtttc 138  Q
    |||| ||| ||||||||||||||||||||||| ||| |||| ||||| |||||||    
T  26824294 tttttactaataaataactaatacttgtttaagaatataaaaaaaaatgtgtttc 26824240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 25483570 - 25483513
Alignment:
Q  61 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaa 118  Q
    |||||||||| || |||||||| ||||||| ||||||||||| | |||||||| ||||    
T  25483570 aatatatcatgcaattctaacttttttgacatataaataacttacacttgttttaaaa 25483513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 31284782 - 31284714
Alignment:
Q  61 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaataaaaa 130  Q
    ||||||||||||| |||||| | ||||||| || || ||||||||| ||||||||| || ||||||||||    
T  31284782 aatatatcatacaattctaattgttttgacatacaa-taactaatatttgtttaaatatataaataaaaa 31284714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 27337893 - 27337945
Alignment:
Q  211 attaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||||| || ||||||  |||||||||||| |||||| ||||||||||    
T  27337893 attaagtaaagtggggtacccttgactaaaatggtggccggagaagttagcag 27337945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 27398633 - 27398685
Alignment:
Q  211 attaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||||| || ||||||  |||||||||||| |||||| ||||||||||    
T  27398633 attaagtaaagtggggtacccttgactaaaatggtggccggagaagttagcag 27398685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 157
Target Start/End: Complemental strand, 8045 - 7902
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact-aatacttgttta 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||| || || ||| | ||||||||||||    
T  8045 ataagttagtatgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgttta 7946  T
Q  115 aaaatgtaaata-aaaaggtgtttccaatttaggctttaagatg 157  Q
    |||| ||||||| |||| |||||||| |||||||||||||||||    
T  7945 aaaacgtaaatagaaaaagtgtttcccatttaggctttaagatg 7902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 263
Target Start/End: Complemental strand, 7885 - 7832
Alignment:
Q  210 aattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||||| ||  ||||||| ||||| ||||||||||||||||||||||||    
T  7885 aattaagtaaatagtcgtacccatgactagaatggtagccggacaagttagcag 7832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 13299 - 13442
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatatcatacatttctaactattttgacttataaataact-aatacttgttta 114  Q
    |||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||||||||||||||||||||| || || ||| | ||||||||||||    
T  13299 ataagttagtatgtaacaacatcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaagtaattaaatacttgttta 13398  T
Q  115 aaaatgtaaata-aaaaggtgtttccaatttaggctttaagatg 157  Q
    |||| ||||||| |||| |||||||| |||||||||||||||||    
T  13399 aaaacgtaaatagaaaaagtgtttcccatttaggctttaagatg 13442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 4336 - 4481
Alignment:
Q  16 ataagtcagtatgtaacaacatcacagtcacatccatgtactcataatatat--catacatttctaactattttgacttataaataact-aatacttgtt 112  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||||||| |||| || || ||| | ||||||||||    
T  4336 ataagttagtatgtaacaacatcacaatcacatccatgtactcataatatatggtatacatttctaactattgtgacataaaagtaattaaatacttgtt 4435  T
Q  113 taaaaatgtaaata-aaaaggtgtttccaatttaggctttaagatg 157  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||    
T  4436 taaaaacgtaaatataaaaggtgtttcccatttaggctttaagatg 4481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 4498 - 4551
Alignment:
Q  210 aattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||||| ||| ||||||| ||||| ||||||||||||||||||||||||    
T  4498 aattaagtaaataggcgtacccatgactagaatggtagccggacaagttagcag 4551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 13459 - 13512
Alignment:
Q  210 aattaagtaaagaggagtacccaggactaaaatggtagccggacaagttagcag 263  Q
    ||||||||||| ||  ||||||| ||||| ||||||||||||||||||||||||    
T  13459 aattaagtaaatagtcgtacccatgactagaatggtagccggacaagttagcag 13512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 169
Target Start/End: Original strand, 267977 - 268130
Alignment:
Q  23 agtatgtaacaacatcacag--tcacatccatg----tactcataatatatcatacatttctaactattttgacttataaataactaatacttgtttaaa 116  Q
    |||||||||||||||||||   |||||||||||    |||||| ||||||| |||| ||||||||||||| | | |||||| ||||||||||| |||| |    
T  267977 agtatgtaacaacatcacacaatcacatccatgcatgtactcaaaatatattatacgtttctaactatttcgtcatataaacaactaatacttatttaga 268076  T
Q  117 aatgtaaat-aaaaaggtgtttccaatttaggctttaagatggtattattgagg 169  Q
    || |||||| |||||||| ||  | ||||| | |||||||||||||||| ||||    
T  268077 aacgtaaataaaaaaggttttagccatttatggtttaagatggtattatcgagg 268130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 268167 - 268221
Alignment:
Q  206 caagaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttag 260  Q
    |||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||    
T  268167 caagaattaagtaaagagcagtacccacgactagaatggtagccagacaagttag 268221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 28164033 - 28164100
Alignment:
Q  61 aatatatcatacatttctaactattttgacttataaataactaatacttgtttaaaaatgtaaataaa 128  Q
    |||| ||||||||  ||||||||||||||| |||||||| || |||||||||||||||  ||||||||    
T  28164033 aatacatcatacaactctaactattttgacatataaatatcttatacttgtttaaaaacataaataaa 28164100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 28127509 - 28127546
Alignment:
Q  226 gtacccaggactaaaatggtagccggacaagttagcag 263  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  28127509 gtaccctggactataatggtagccggacaagttagcag 28127546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 28164193 - 28164230
Alignment:
Q  226 gtacccaggactaaaatggtagccggacaagttagcag 263  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  28164193 gtaccctggactataatggtagccggacaagttagcag 28164230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 28127352 - 28127400
Alignment:
Q  80 actattttgacttataaataactaatacttgtttaaaaatgtaaataaa 128  Q
    ||||||||||| |||||||| || |||||||||||||||  ||||||||    
T  28127352 actattttgacatataaataccttatacttgtttaaaaacataaataaa 28127400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 29273596 - 29273647
Alignment:
Q  209 gaattaagtaaagaggagtacccaggactaaaatggtagccggacaagttag 260  Q
    ||||||||||||||| |||||||| ||||| |||||||||| ||||||||||    
T  29273596 gaattaagtaaagagcagtacccatgactagaatggtagccagacaagttag 29273647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 14084 - 14135
Alignment:
Q  3 catgtccaagaatataagtcagtatgtaacaacatcacagtcacatccatgt 54  Q
    ||||||||| || |||||| ||||||| ||||||||||| ||||||||||||    
T  14084 catgtccaataagataagttagtatgtgacaacatcacaatcacatccatgt 14135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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