View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14076_high_1 (Length: 1099)

Name: NF14076_high_1
Description: NF14076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14076_high_1
NF14076_high_1
[»] chr2 (7 HSPs)
chr2 (327-964)||(329837-330470)
chr2 (25-207)||(332134-332321)
chr2 (222-298)||(332003-332079)
chr2 (1021-1099)||(329702-329780)
chr2 (18-69)||(40598127-40598178)
chr2 (18-68)||(32776111-32776161)
chr2 (18-68)||(38963519-38963569)
[»] chr3 (5 HSPs)
chr3 (18-68)||(3547631-3547681)
chr3 (18-68)||(28690516-28690566)
chr3 (18-61)||(9145509-9145552)
chr3 (36-70)||(39435264-39435298)
chr3 (19-69)||(52550828-52550878)
[»] chr1 (5 HSPs)
chr1 (18-68)||(16751664-16751714)
chr1 (18-68)||(50481278-50481328)
chr1 (18-68)||(38738189-38738239)
chr1 (18-68)||(47222214-47222264)
chr1 (67-120)||(49177244-49177297)
[»] chr7 (4 HSPs)
chr7 (18-69)||(35500958-35501009)
chr7 (18-69)||(37231775-37231826)
chr7 (23-69)||(31497919-31497965)
chr7 (18-68)||(34478222-34478272)
[»] chr6 (2 HSPs)
chr6 (67-122)||(6139315-6139370)
chr6 (31-69)||(16434752-16434790)
[»] chr4 (6 HSPs)
chr4 (18-68)||(19731376-19731426)
chr4 (18-68)||(50033020-50033070)
chr4 (20-68)||(50035539-50035587)
chr4 (18-69)||(19525925-19525976)
chr4 (23-66)||(31486288-31486331)
chr4 (18-68)||(51737164-51737214)
[»] chr8 (1 HSPs)
chr8 (20-68)||(44123673-44123721)
[»] chr5 (1 HSPs)
chr5 (17-68)||(42421685-42421736)


Alignment Details
Target: chr2 (Bit Score: 609; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 327 - 964
Target Start/End: Complemental strand, 330470 - 329837
Alignment:
327 taaaacgaatttaaggtataaaaaacacagcacgaatctaccattgctctaactattgttgtgactatcgtacattcagaagtgaaggccatcaacgatt 426  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
330470 taaaacgaatttaaagtataaaaaacacagcacgaatctaccattgctcta----ttgttgtgactatcgtacattcagaagtgaaggccatcaacgatt 330375  T
427 caactgccatgctatcatctgccaagaaaaaactacaacataaaaaatatagtctcatttggagtagttaacactttaaaatgagacagctactccatta 526  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
330374 caactgccatgctatcatctgccaagaaaaaactacaacataaaaaatatagtctcatttggagtagttaacactttaaaatgagacagctactccatta 330275  T
527 acgacccaatagccgcgtgaattgaactagtgcgggcagattttctttggtgtatcagtgagtgcggaccactccacacagactgactatttttggggaa 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
330274 acgacccaatagccgcgtgaattgaactagtgcgggcagattttctttggtgtatcagtgagtgcggaccactccacacagactgactatttttggggaa 330175  T
627 gagagttccacacaaacttgaaagcatggggttttcagagcataagctctcaagtagcttagctttttgatgtttatcttggggttcctacaaacacatc 726  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
330174 gagagttccacacaaacttgaaagcatggggttttcagagcataagctctcaagtagcttagctttttgatgtttatcttggggttcctacaaacacatc 330075  T
727 gaaccatttaagtccacactgcaacaacagatatgcaaataatcattacagcaatcaaatagtgtttgatataccttgtgcttcttctgttgctggacca 826  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
330074 gaaccatttaagtccacactgcaacaacaaatatgcaaataatcattacagcaatcaaatagtgtttgatataccttgtgcttcttctgttgctggacca 329975  T
827 ctgcagcttgtccttcttgttgagtagttttatattcatcatgaagagcggctgtgtctccaacttccgattcctctgccaaggttccaccatgccttaa 926  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
329974 ctgcagcttgtccttcttgttgagtatttttatattcatcatgaagagcggctgtgtctccaacttccgattcctctgccaaggttccaccatgccttaa 329875  T
927 agtttcatccatgcgtctcttcaccctgttcatttcaa 964  Q
    ||||||||||||||||||||||||||||||||||||||    
329874 agtttcatccatgcgtctcttcaccctgttcatttcaa 329837  T

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Target: chr2; HSP #2
Raw Score: 144; E-Value: 4e-75
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 332321 - 332134
Alignment:
25 gtgttggagttaactaggtcatctaatatgggacggagggagtaaattatttagatgagtgagaatgaatggctaaaagattgataggcacaaagacatc 124  Q
    |||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
332321 gtgtcggagtcaaataggtcatctaatatgggacggagggagtaaattatttagatgagtgagaatgaatggctaaaagattgataggcacaaagacatc 332222  T
125 aatatcatcaaagccaaa-----ttaagtgtaacccgaaaattgtagtcaattcttcaaaagtaataaaagtgtctttttcaatttaa 207  Q
    ||||||||||||||||||     | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
332221 aatatcatcaaagccaaatgcactgaagtgtaatccgaaaattgtagtcaattcttcaaaagtaaaaaaagtgtctttttcaatttaa 332134  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 332079 - 332003
Alignment:
222 tcattaaatcatatgcattgaaaaatcaaaacaaatgatgtttgtccgatgtgtaatgatataagtttatgtgcatt 298  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
332079 tcattaaatcatatgcattgaaaaatcacaacaaatgatgtttgtccgatgtgtaatgatataagtttatgtgcatt 332003  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 1021 - 1099
Target Start/End: Complemental strand, 329780 - 329702
Alignment:
1021 gggccatggttctcttcctccatcccatcattctcaacttcattgacttcatgcctcccatcagaagggctacagttct 1099  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||    
329780 gggccatggttctcttcctccatcccatcatcatcaacttcatttacttcatgcctcccatcagaagggctacagttct 329702  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 40598178 - 40598127
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagtaa 69  Q
    ||||||||||| | ||| |||||| |||| ||||||||||||||||||||||    
40598178 ggtacgtgtgtcgaagtcaactagatcatttaatatgggacggagggagtaa 40598127  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 32776111 - 32776161
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||| | ||||| |||||||||||||| || |||||||||||||||    
32776111 ggtacgtgtatcggagtcaactaggtcatctattaagggacggagggagta 32776161  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 38963569 - 38963519
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||||| | |||||||||||||||||| || || ||||||||||||    
38963569 ggtacgtgtgtcgaagttaactaggtcatctattaaggaacggagggagta 38963519  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 3547631 - 3547681
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||||||    
3547631 ggtacgtgtgtcggagtcaattaggtcatctaatatgggacggagggagta 3547681  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 28690566 - 28690516
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    |||| |||||| ||||| ||||||||||||||||||| |||||||||||||    
28690566 ggtatgtgtgtcggagtcaactaggtcatctaatatgtgacggagggagta 28690516  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 9145552 - 9145509
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacgga 61  Q
    ||||||||||| ||||| |||||||||||||||||||| |||||    
9145552 ggtacgtgtgtcggagtcaactaggtcatctaatatggaacgga 9145509  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 39435264 - 39435298
Alignment:
36 aactaggtcatctaatatgggacggagggagtaaa 70  Q
    ||||||||||||||||| |||||||||||||||||    
39435264 aactaggtcatctaataagggacggagggagtaaa 39435298  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 52550828 - 52550878
Alignment:
19 gtacgtgtgttggagttaactaggtcatctaatatgggacggagggagtaa 69  Q
    |||||| ||| ||||| ||||| ||||||||||||||||||||| ||||||    
52550828 gtacgtatgtcggagtcaactaagtcatctaatatgggacggagagagtaa 52550878  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 16751664 - 16751714
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||||||    
16751664 ggtacgtgtgtcggagtcaactaggtcatctaatatggaacggagggagta 16751714  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 50481328 - 50481278
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||||| ||| | ||||| |||||||||||||||||||||||||||    
50481328 ggtacgtgtgtcggaatcaactaagtcatctaatatgggacggagggagta 50481278  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 38738189 - 38738239
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||||| ||||| ||||||||||||||||||  |||||||| ||||    
38738189 ggtacgtgtgtcggagtcaactaggtcatctaatattagacggaggaagta 38738239  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 47222264 - 47222214
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||||| ||||| ||||||||||| |||||||||| ||||| ||||    
47222264 ggtacgtgtgtcggagtcaactaggtcatttaatatgggatggaggaagta 47222214  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 49177297 - 49177244
Alignment:
67 taaattatttagatgagtgagaatgaatggctaaaagattgataggcacaaaga 120  Q
    ||||||||||||||||| || ||||||||| |||||||  |||||| |||||||    
49177297 taaattatttagatgagagaaaatgaatggttaaaagagagataggaacaaaga 49177244  T

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Target: chr7 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 35500958 - 35501009
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagtaa 69  Q
    ||||||||||| | |||||||||| |||| ||||||||||||||||||||||    
35500958 ggtacgtgtgtcgaagttaactagatcatttaatatgggacggagggagtaa 35501009  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 37231775 - 37231826
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagtaa 69  Q
    ||||||||||| | ||| |||||| |||| ||||||||||||||||||||||    
37231775 ggtacgtgtgtcgaagtcaactagatcatttaatatgggacggagggagtaa 37231826  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 31497919 - 31497965
Alignment:
23 gtgtgttggagttaactaggtcatctaatatgggacggagggagtaa 69  Q
    |||||| ||||| |||||||| |||||||||||||| ||||||||||    
31497919 gtgtgtcggagtcaactaggttatctaatatgggaccgagggagtaa 31497965  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 34478222 - 34478272
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||||| | ||| |||||||| || |||||||||||||||||||||    
34478222 ggtacgtgtgtcgaagtcaactaggttatttaatatgggacggagggagta 34478272  T

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Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 6139370 - 6139315
Alignment:
67 taaattatttagatgagtgagaatgaatggctaaaagattgataggcacaaagaca 122  Q
    ||||||||||||||||| |||||||||||| |||||||  |||||| |||||||||    
6139370 taaattatttagatgagagagaatgaatggttaaaagagagataggaacaaagaca 6139315  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 16434752 - 16434790
Alignment:
31 gagttaactaggtcatctaatatgggacggagggagtaa 69  Q
    |||| |||||| |||||||||||||||||||||||||||    
16434752 gagtcaactagttcatctaatatgggacggagggagtaa 16434790  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 19731376 - 19731426
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||||| ||||| |||||||||||||||||||| ||| ||||||||    
19731376 ggtacgtgtgtcggagtcaactaggtcatctaatatggaacgaagggagta 19731426  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 50033070 - 50033020
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||| |||||    
50033070 ggtacgtgtgtcggagtcaactaagtcatctaatatgggacggagagagta 50033020  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 50035587 - 50035539
Alignment:
20 tacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||| ||||| |||||| |||||||||||||||||||| |||||    
50035587 tacgtgtgtcggagtcaactagatcatctaatatgggacggagagagta 50035539  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 19525925 - 19525976
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagtaa 69  Q
    ||||||||||| | ||| ||||||||||| |||||| |||||||||||||||    
19525925 ggtacgtgtgtcgaagtcaactaggtcatttaatataggacggagggagtaa 19525976  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 31486331 - 31486288
Alignment:
23 gtgtgttggagttaactaggtcatctaatatgggacggagggag 66  Q
    ||||||| |||| |||||||||||||||||||||||| ||||||    
31486331 gtgtgttagagtcaactaggtcatctaatatgggacgaagggag 31486288  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 51737164 - 51737214
Alignment:
18 ggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||||| ||||| ||| |||| |||||||||||||||||| |||||    
51737164 ggtacgtgtgtcggagtcaacaaggttatctaatatgggacggagagagta 51737214  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 44123721 - 44123673
Alignment:
20 tacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    ||||||||| ||||| |||||| |||||||||||||||||||| |||||    
44123721 tacgtgtgtcggagtcaactagatcatctaatatgggacggagagagta 44123673  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 42421736 - 42421685
Alignment:
17 aggtacgtgtgttggagttaactaggtcatctaatatgggacggagggagta 68  Q
    |||||||||||| ||||| |||||| ||||||||||||| |||||| |||||    
42421736 aggtacgtgtgtcggagtcaactagatcatctaatatggaacggagtgagta 42421685  T

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