View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14076_high_9 (Length: 208)
Name: NF14076_high_9
Description: NF14076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14076_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 16778544 - 16778382
Alignment:
| Q |
23 |
agtcaggaattaagcttagaggggacaagtagaaaatatgatttagtgaagnnnnnnntgaatgtttatatgcacgatatttacaagatatttaagaaat |
122 |
Q |
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| T |
16778544 |
agtcaggaattaagcttagaggggacaaatagaaaatatgatttagtgaagaaaaaaatgaatgtttatatgcacaatatttacaagatatttaagaaat |
16778445 |
T |
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| Q |
123 |
tataagataaaattatnnnnnnnttcaagaatataagaaagatgagagtgtcttgaggcttgt |
185 |
Q |
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| T |
16778444 |
tataagataaaattataaaaaaaatcaaggatataagaaagatgagagtgtcttgaggcttgt |
16778382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 35370629 - 35370738
Alignment:
| Q |
81 |
tgaatgtttatatgcacgatatttacaagatatttaagaaattataagat------aaaattatnnnnnnnttcaagaatataagaaagatgagagtgtc |
174 |
Q |
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| T |
35370629 |
tgaatgtttaaatgtacaatatttacaagatatttaagaaattattagatatattcaaaattat-aagaaattcaaggatataagaaagatgagagtgtc |
35370727 |
T |
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| Q |
175 |
ttgaggcttgt |
185 |
Q |
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|| |||||||| |
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| T |
35370728 |
tttaggcttgt |
35370738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 22358124 - 22358022
Alignment:
| Q |
27 |
aggaattaagcttagaggggac-aagtagaaaatatgatttagtgaagnnnnnnntgaatgtttatatgcacgatatttacaagatatttaagaaattat |
125 |
Q |
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| T |
22358124 |
aggaattaagcttaggggggaccaagttgaaaatatgatttagtgaa---aaaaatgaatgtttaaatgaataatatttgaaagatatttaagaaattat |
22358028 |
T |
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| Q |
126 |
aagata |
131 |
Q |
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|||||| |
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| T |
22358027 |
aagata |
22358022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 35378320 - 35378365
Alignment:
| Q |
86 |
gtttatatgcacgatatttacaagatatttaagaaattataagata |
131 |
Q |
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| T |
35378320 |
gtttaaatgtacaatatttacaagatatttaagaaattataagata |
35378365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 41493679 - 41493723
Alignment:
| Q |
87 |
tttatatgcacgatatttacaagatatttaagaaattataagata |
131 |
Q |
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| T |
41493679 |
tttaaatgcacaacatatacaagatatttaagaaattataagata |
41493723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 12892212 - 12892171
Alignment:
| Q |
87 |
tttatatgcacgatatttacaagatatttaagaaattataag |
128 |
Q |
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|||| ||||| ||||| ||||||||||||||||||||||||| |
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| T |
12892212 |
tttaaatgcatgatatatacaagatatttaagaaattataag |
12892171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 31700780 - 31700828
Alignment:
| Q |
83 |
aatgtttatatgcacgatatttacaagatatttaagaaattataagata |
131 |
Q |
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|||||||| |||||| ||||||| || |||||||||||||| ||||||| |
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| T |
31700780 |
aatgtttaaatgcacaatatttagaacatatttaagaaattttaagata |
31700828 |
T |
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