View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14076_low_3 (Length: 528)
Name: NF14076_low_3
Description: NF14076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14076_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 513
Target Start/End: Complemental strand, 7907314 - 7906817
Alignment:
| Q |
10 |
aacaagattaaaacttttgaaagagaattttaccattcattacaattttatttacctcaagattaatatttgtcgttgcgtgaagatgtttcacacccaa |
109 |
Q |
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| T |
7907314 |
aacaatattaaaacttttgaaagagaattttaccattcattgcagttttatttacctcaagattaatatttgtggttgcgtgaagatgttgcacacccaa |
7907215 |
T |
|
| Q |
110 |
caaaacaaataaagaagtacaagtaagaataaacaaataaattttggaaggttagtttaatttttaagaaaaagaaaagtataaaggtgtaacaaaaacc |
209 |
Q |
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| T |
7907214 |
aaaaacaaataaagaagtacaagtaagaatagacaaataaattttggtaggttagattaatttttaagaaaaagaaaagtataaaggtggaacaaaaacc |
7907115 |
T |
|
| Q |
210 |
ttgtgctttannnnnnnnnctttcctttgttggtgaagtgttggatcgtaggactttgacacctgtcttgagtgttgacctgtgctaactttcaagtcaa |
309 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||| |
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| T |
7907114 |
ttgtgctttattttttt--ctttcctttgttggtgaagtgttggatcgtaggactttgacacctgtattgagtattgacttgtgctaactttcaagtcaa |
7907017 |
T |
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| Q |
310 |
tttcctaatttcgttaaatactgctgttttcagaaagatatcttacatacaaagattctccaccacaattttctatttcctctcccacaaagaaacatcc |
409 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7907016 |
tttcctaatttcgttaaata---ttggtttcagaaagatatcttacatacaaagattctccaccacaattttctatttcctctcccacaaagaaacatcc |
7906920 |
T |
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| Q |
410 |
ctttgannnnnnnacttcccaaatttcaattgtcaaaagttcttttatctcttaattattactcttttccnnnnnnnntccactttctcaatttgtttag |
509 |
Q |
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| T |
7906919 |
ctttgatttttttacttcccaaatttcaattgtcaaaagttcatttatctcttaattattactcttttcc-aaaaaaatccactttctcaatttgtttag |
7906821 |
T |
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