View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14076_low_5 (Length: 373)
Name: NF14076_low_5
Description: NF14076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14076_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 157 - 363
Target Start/End: Complemental strand, 6451262 - 6451076
Alignment:
| Q |
157 |
tttatcatgagataaatctaaataaaattttggatgttggatttaggtataacaacgtactaattaataattataaccaaaagaagtaaaagactaaata |
256 |
Q |
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| T |
6451262 |
tttatcatgagataaatctaaataaaattttggatgctggatttaggtataacaacgtactaatta-------taaccaaaa----------------ta |
6451186 |
T |
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| Q |
257 |
atgttgtgtttaaaatttgataaaatcacttttgacattgcatttat----gttgaattttaatttttaaacacggaatttttctacatgttttatcaaa |
352 |
Q |
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| T |
6451185 |
atgttgtgcttaaaatttgataaaatcacttt-gacattgcatttatatatgttaaattttaatttttaaacacggaatttttctacatattttatcaaa |
6451087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6451339 - 6451263
Alignment:
| Q |
1 |
caatgtcatacataactatatatttttctttttaattcacacatgcatataaagtgttgagaagtcaagaattgtgaa |
78 |
Q |
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| T |
6451339 |
caatgtcatacataactatatatttttctttt-aattcacacatatatataaagttttgagaagtcaagaattgtgaa |
6451263 |
T |
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