View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14076_low_6 (Length: 355)
Name: NF14076_low_6
Description: NF14076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14076_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 6 - 339
Target Start/End: Original strand, 15128742 - 15129075
Alignment:
| Q |
6 |
cacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgacatg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15128742 |
cacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgacatg |
15128841 |
T |
|
| Q |
106 |
gtcatggttctatcttatggtatgttaattccttattcttcttcgcgcttttatttcctagtactatccattccctcgtaatttttggctggtttttaaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15128842 |
gtcatggttctatcttatggtatgttaattccttattcttcttcgcgcttttattacctagtactatccattccctcgtaatttttggctggtttttaaa |
15128941 |
T |
|
| Q |
206 |
gggaaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtctagctgcaggaagaatt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15128942 |
gggaaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtctagctgcaggaagaatt |
15129041 |
T |
|
| Q |
306 |
cccttccatatattagcaagaagcatcaatgaat |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
15129042 |
cccttccatatattagcaagaagcatcaatgaat |
15129075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 14946338 - 14946007
Alignment:
| Q |
6 |
cacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgacatg |
105 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14946338 |
cacagatgccattctacaaagaataatcagacaagagtttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgacatg |
14946239 |
T |
|
| Q |
106 |
gtcatggttctatcttatggtatgttaattccttattcttcttcgcgcttttatttcctagtactatccattccctcgtaatttttggctggtttttaaa |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||||||||| ||||||| ||| |||| ||||| |
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|
| T |
14946238 |
gtcatggtcctatcttatggtatgttaattccttattattctttgc--ttttatttcctagtaatatccattccctcataattttcggccggttattaaa |
14946141 |
T |
|
| Q |
206 |
gggaaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtctagctgcaggaagaatt |
305 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
14946140 |
gggaaactggtggaatatgatgaaccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtccagctgcaggaagagtt |
14946041 |
T |
|
| Q |
306 |
cccttccatatattagcaagaagcatcaatgaat |
339 |
Q |
| |
|
|| | ||| ||||||||| ||||||||||||||| |
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|
| T |
14946040 |
ccttcccaaatattagcaggaagcatcaatgaat |
14946007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 5287060 - 5286771
Alignment:
| Q |
10 |
gatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgacatggtca |
109 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5287060 |
gatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgacatggtca |
5286961 |
T |
|
| Q |
110 |
tggttctatcttatggtatgttaattccttattcttcttcgcgcttttatttcctagtactatccattccctcgtaatttttggctggttt-ttaaaggg |
208 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| |||||| ||||| ||| ||| | || |||| |||||||| |||||||| |||||||| |
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|
| T |
5286960 |
tggtcctatcttatggtatgttatttccttaatcttct--ctacttttgttttctatt-------tttgcctcataattttttgctggtttattaaaggg |
5286870 |
T |
|
| Q |
209 |
aaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtctagctgcaggaagaattcc |
307 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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|
| T |
5286869 |
aaacttgtggaatatgatgagccttcaaagctaatggatacaaactcatcattctctaagctggtagctgaatattggtctagttgcaggaagagttcc |
5286771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 5310110 - 5310405
Alignment:
| Q |
6 |
cacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgacatg |
105 |
Q |
| |
|
||||||||| || ||||||||| |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5310110 |
cacagatgcaatactacaaagagtaattagacaagaatttgcagaatgcacagtcataactgtggctcacagagttccaactgtcatagacagtgacatg |
5310209 |
T |
|
| Q |
106 |
gtcatggttctatcttatggtatgttaattccttattcttcttcgcgcttttatttcctagtactatccattccctcgtaatttttggctgg---ttttt |
202 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| ||||| ||| ||| | || ||||||||||||| |||| || || |
|
|
| T |
5310210 |
gtcatggtcctatcttatggtatgttatttccttattcttct--atacttttgttttctatt-------tttgcctcgtaatttttttctggttattatt |
5310300 |
T |
|
| Q |
203 |
aaagggaaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtctagctgcaggaaga |
302 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5310301 |
atagggaaacttgtggaatatgatgagccttcaaagctaatgaacacaaactcttcattctctaagttggtagctgaatattggtctagctgcaggaaga |
5310400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 5279117 - 5278995
Alignment:
| Q |
201 |
ttaaagggaaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtctagctgcaggaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5279117 |
ttaaagggaaactggtggaatatgatgagccttcaaagctaatggacacaaactcttcattctctaagctggtagctgaatattggtctagttgcaggaa |
5279018 |
T |
|
| Q |
301 |
gaattcccttccatatattagca |
323 |
Q |
| |
|
||||||||||||| | ||||||| |
|
|
| T |
5279017 |
gaattcccttccaaacattagca |
5278995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 5279337 - 5279197
Alignment:
| Q |
6 |
cacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgacatg |
105 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5279337 |
cacagatgcaattctacaaagagtaattagacaagaattcgaagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtgacatg |
5279238 |
T |
|
| Q |
106 |
gtcatggttctatcttatggtatgttaattccttattcttc |
146 |
Q |
| |
|
|| |||| |||||||||||||| | | |||||||||||| |
|
|
| T |
5279237 |
gttctggtcttatcttatggtatgcttaatccttattcttc |
5279197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 6 - 146
Target Start/End: Original strand, 5316758 - 5316898
Alignment:
| Q |
6 |
cacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgacatg |
105 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
5316758 |
cacagatgccattctacaaagagtaattagacaagaattttcagaatgcacggttataaccgttgctcacagaattccaactgtaatagatagtgacatg |
5316857 |
T |
|
| Q |
106 |
gtcatggttctatcttatggtatgttaattccttattcttc |
146 |
Q |
| |
|
|||||||| |||||||||||||| | | |||||||||||| |
|
|
| T |
5316858 |
gtcatggtcttatcttatggtatgcttaatccttattcttc |
5316898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 6 - 127
Target Start/End: Complemental strand, 5348022 - 5347901
Alignment:
| Q |
6 |
cacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgacatg |
105 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| || |||||||| ||| |
|
|
| T |
5348022 |
cacagatgctattctacaaaaaataattagacaagaatttgcagaatgcacagttataactgtagctcatagagttccaactgttattgacagtgatatg |
5347923 |
T |
|
| Q |
106 |
gtcatggttctatcttatggta |
127 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
5347922 |
gtcatggttctttcttatggta |
5347901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 5316977 - 5317076
Alignment:
| Q |
201 |
ttaaagggaaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtctagctgcaggaa |
300 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5316977 |
ttaaagggaaagtgatggaatatgatgagccttcaaagctaatggacacaaactcttcattctctaagctggtagctgaatattggtctagctgcaggaa |
5317076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 301
Target Start/End: Original strand, 5299420 - 5299521
Alignment:
| Q |
205 |
agggaaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagct-----ggtagctgaatattggtctagctgcagga |
299 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| | || ||||||||| |||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
5299420 |
agggaaacttgtggaatatgatgagccttcaaagctaatgaacacaaactcttcagtctctaagttaagttggtagctgaatattggtctagctgcagga |
5299519 |
T |
|
| Q |
300 |
ag |
301 |
Q |
| |
|
|| |
|
|
| T |
5299520 |
ag |
5299521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 5346549 - 5346457
Alignment:
| Q |
209 |
aaactggtggaatatgatgagccttcaaagctaatggataccaa---ctcttcattctctaagctggtagctgaatattggtctagctgcagg |
298 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||||| ||| ||||||||||| ||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
5346549 |
aaactggttgaatatgatgaaccttcaaaactgatggaggacaattcttcttcattctccaagcttgtagctgaatactggtccagctgcagg |
5346457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 31523506 - 31523367
Alignment:
| Q |
6 |
cacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacagtgacatg |
105 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||| ||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31523506 |
cacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaattccaactgtaatagacagtgacatg |
31523407 |
T |
|
| Q |
106 |
gtcatggttctatcttatggtatgttaattccttattctt |
145 |
Q |
| |
|
|||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
31523406 |
gtcatgatcctatcttatggtatgttgattccttattctt |
31523367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 202 - 307
Target Start/End: Complemental strand, 31523164 - 31523059
Alignment:
| Q |
202 |
taaagggaaactggtggaatatgatgagccttcaaagctaatggataccaactcttcattctctaagctggtagctgaatattggtctagctgcaggaag |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
31523164 |
taaagggaaactggtggaatatgatgagccttcaaagctaatggaaaccaactcttcattctctaagctggtagctgagtattggtctagctacaagaag |
31523065 |
T |
|
| Q |
302 |
aattcc |
307 |
Q |
| |
|
| |||| |
|
|
| T |
31523064 |
agttcc |
31523059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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