View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14076_low_7 (Length: 350)
Name: NF14076_low_7
Description: NF14076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14076_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 29087550 - 29087289
Alignment:
| Q |
1 |
aatgtaaatggtagatatctaaggaatggaatcagtgatttttcatttgcttccaaagttaggtttactaaagtcagattaattctggcattttgtctac |
100 |
Q |
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| T |
29087550 |
aatgtaaatggtagatatctaaggaatggaatcagtgatttttcatttgcttccaaagttaggtttactaaagtcagattaattctggcattttgtctac |
29087451 |
T |
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| Q |
101 |
caagtaggtcccatagacagttcatcttgaccttttaagatttcattttccttttgtgtgttttcatatttgaattcctgtgcttagtcctttccatatt |
200 |
Q |
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| T |
29087450 |
caagtaggtcccatagacagttcatcttgaccttttaagatttcattttccttttgtgtgttttcacatttgaattcctgtgcttagtcctttccatatt |
29087351 |
T |
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| Q |
201 |
tccatccatagaatagtaaatcttatataagtat-atactataggctatagtgcttcaaacaa |
262 |
Q |
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| T |
29087350 |
tccatccatagaatagtaaatcttatataa-tataatactatagactatagtgcttcaaacaa |
29087289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 331
Target Start/End: Complemental strand, 29087258 - 29087220
Alignment:
| Q |
293 |
cccctactattctcaattctttctatacaaaactgttat |
331 |
Q |
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| T |
29087258 |
cccctactattctcaattctttctatacaaaactgttat |
29087220 |
T |
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