View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14076_low_8 (Length: 327)

Name: NF14076_low_8
Description: NF14076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14076_low_8
NF14076_low_8
[»] chr8 (4 HSPs)
chr8 (10-311)||(9830005-9830304)
chr8 (11-84)||(6623177-6623250)
chr8 (12-84)||(6789942-6790014)
chr8 (17-78)||(42448532-42448593)
[»] chr2 (2 HSPs)
chr2 (12-84)||(18851562-18851634)
chr2 (12-96)||(29731964-29732048)
[»] scaffold0470 (1 HSPs)
scaffold0470 (11-84)||(12601-12674)
[»] scaffold0014 (1 HSPs)
scaffold0014 (28-73)||(87166-87211)
[»] chr1 (2 HSPs)
chr1 (12-84)||(2570351-2570423)
chr1 (15-70)||(14614621-14614676)
[»] chr4 (1 HSPs)
chr4 (11-62)||(53087988-53088039)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 311
Target Start/End: Original strand, 9830005 - 9830304
Alignment:
Q  10 attatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatgcgataaggaatgaaacatcacaaat 109  Q
    |||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9830005 attatactctttacaagaatatcaaagtgttttcttggggtatagtcactacggacatttcggtgaggcgaaatgcgataaggaatgaagcatcacaaat 9830104  T
Q  110 gagtcaaccaatggaagaagcgtgatgcatgtgttgagccacgtgtcgcacaatcacaagggaattcagaatgaaaccacactgcctaagccgtgacacg 209  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  9830105 gagtcaaccattggaagaagcgtgatgcatgtgttgagccacgt-tcgcacaatcacaagggaattcagaatggaaccacactgcctaagacgtgacacg 9830203  T
Q  210 tgctatgagccacacatcgcgccatcatgnnnnnnnntcgaagtggatcactaccacccttgatgtgacgcagtaaagctggtgtgcatcatgcacacac 309  Q
    |||||||||||||||||||||||||||||        |||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  9830204 tgctatgagccacacatcgcgccatcatg-aaaaaaatcgaagtggatcgctaccgcccttgatgtgaagcagtaaagctggtgtgcatcatgcacacac 9830302  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 6623250 - 6623177
Alignment:
Q  11 ttatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatg 84  Q
    ||||||||| || |||| ||||||||||||||||||||| ||||||||||| |||||||| |||| | ||||||    
T  6623250 ttatactttgtacaagattatcaaagtgatttcttggggaatagtcactactgacatttcagtgaagtgaaatg 6623177  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 6790014 - 6789942
Alignment:
Q  12 tatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatg 84  Q
    |||||||| || |||| ||||||||||||||||||||| ||||||||||| |||||||| |||| | ||||||    
T  6790014 tatactttgtacaagattatcaaagtgatttcttggggaatagtcactacagacatttcagtgaagtgaaatg 6789942  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 42448532 - 42448593
Alignment:
Q  17 tttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggc 78  Q
    |||||| |||| ||| |||||||||||||||||||||||||||||   ||||| ||||||||    
T  42448532 tttttacaagattattaaagtgatttcttggggtatagtcactacatgcattttggtgaggc 42448593  T

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Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 18851634 - 18851562
Alignment:
Q  12 tatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatg 84  Q
    ||||| || ||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |||||    
T  18851634 tatacattctataagattatcaaagtgatttcttggggtatagtcactacgaacattttggtgaggcaaaatg 18851562  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 29731964 - 29732048
Alignment:
Q  12 tatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatgcgataaggaatg 96  Q
    ||||||||||| |||| |||||| ||||||| || ||||||||||| ||  ||  ||| |||||||| ||||| || ||||||||    
T  29731964 tatactttttacaagagtatcaatgtgattttttcgggtatagtcattatagaagttttggtgaggcaaaatgagacaaggaatg 29732048  T

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Target: scaffold0470 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 12674 - 12601
Alignment:
Q  11 ttatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatg 84  Q
    ||||||||| || |||| ||||||||||||||||||||| ||||||||||| |||||||| |||| | ||||||    
T  12674 ttatactttgtacaagattatcaaagtgatttcttggggaatagtcactactgacatttcagtgaagtgaaatg 12601  T

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Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 87211 - 87166
Alignment:
Q  28 atatcaaagtgatttcttggggtatagtcactacggacatttcggt 73  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||    
T  87211 atatcaaagtgatttcttggggtgtagtcattatggacatttcggt 87166  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 2570351 - 2570423
Alignment:
Q  12 tatactttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttcggtgaggcgaaatg 84  Q
    ||||||||||| ||| || ||||  |||||||||| ||||||||||||||| || |||  |||||||||||||    
T  2570351 tatactttttacaaggatgtcaacatgatttcttgaggtatagtcactacgaacgttttagtgaggcgaaatg 2570423  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 14614621 - 14614676
Alignment:
Q  15 actttttataagaatatcaaagtgatttcttggggtatagtcactacggacatttc 70  Q
    ||||||||||||||||   ||||||||||||| || ||||||||||||||| ||||    
T  14614621 actttttataagaataattaagtgatttcttgaggcatagtcactacggacgtttc 14614676  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 53087988 - 53088039
Alignment:
Q  11 ttatactttttataagaatatcaaagtgatttcttggggtatagtcactacg 62  Q
    |||| ||||||| |||| |||||||||||||| ||||||||| |||||||||    
T  53087988 ttatgctttttacaagattatcaaagtgattttttggggtatggtcactacg 53088039  T

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