View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14077_high_2 (Length: 445)

Name: NF14077_high_2
Description: NF14077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14077_high_2
NF14077_high_2
[»] chr8 (11 HSPs)
chr8 (170-429)||(27758153-27758411)
chr8 (1-89)||(27756937-27757027)
chr8 (42-88)||(3547310-3547356)
chr8 (42-96)||(34649621-34649675)
chr8 (42-88)||(38783675-38783721)
chr8 (47-96)||(43638421-43638470)
chr8 (42-96)||(30266010-30266064)
chr8 (42-88)||(31666234-31666280)
chr8 (47-88)||(24100692-24100733)
chr8 (47-88)||(25980773-25980814)
chr8 (43-80)||(28860432-28860469)
[»] chr4 (15 HSPs)
chr4 (1-96)||(470107-470198)
chr4 (1-80)||(11671846-11671933)
chr4 (42-96)||(39121203-39121257)
chr4 (42-96)||(52399284-52399338)
chr4 (43-95)||(23127340-23127392)
chr4 (42-96)||(44502740-44502794)
chr4 (42-96)||(56051232-56051286)
chr4 (1-30)||(25052340-25052369)
chr4 (1-30)||(32208277-32208306)
chr4 (1-30)||(34411344-34411373)
chr4 (1-30)||(34413061-34413090)
chr4 (43-88)||(43277452-43277497)
chr4 (59-88)||(49629096-49629125)
chr4 (1-30)||(52470230-52470259)
chr4 (47-88)||(53448017-53448058)
[»] chr7 (19 HSPs)
chr7 (1-96)||(3563048-3563143)
chr7 (41-96)||(34996757-34996812)
chr7 (9-88)||(42561871-42561950)
chr7 (1-90)||(11202381-11202479)
chr7 (42-95)||(18791140-18791193)
chr7 (351-383)||(29222287-29222319)
chr7 (47-90)||(33989723-33989766)
chr7 (42-84)||(40786342-40786384)
chr7 (47-88)||(2088311-2088352)
chr7 (47-88)||(2430612-2430653)
chr7 (1-30)||(10048275-10048304)
chr7 (1-30)||(33989794-33989823)
chr7 (1-30)||(41203982-41204011)
chr7 (1-30)||(41816553-41816582)
chr7 (47-88)||(43637370-43637411)
chr7 (1-30)||(46290443-46290472)
chr7 (1-49)||(33614103-33614151)
chr7 (47-95)||(40718390-40718438)
chr7 (2-30)||(49024170-49024198)
[»] chr1 (17 HSPs)
chr1 (47-90)||(29232558-29232601)
chr1 (1-95)||(43361442-43361536)
chr1 (42-96)||(26940348-26940402)
chr1 (47-96)||(5187027-5187076)
chr1 (47-96)||(43360349-43360398)
chr1 (41-95)||(12633139-12633193)
chr1 (42-88)||(46085594-46085640)
chr1 (1-30)||(10617325-10617354)
chr1 (47-96)||(19067309-19067358)
chr1 (47-96)||(19115199-19115248)
chr1 (47-96)||(23201923-23201972)
chr1 (1-30)||(23202000-23202029)
chr1 (1-30)||(29733292-29733321)
chr1 (1-30)||(38674191-38674220)
chr1 (47-88)||(41318478-41318519)
chr1 (2-30)||(30720930-30720958)
chr1 (47-95)||(46614486-46614534)
[»] chr5 (12 HSPs)
chr5 (47-96)||(13760971-13761020)
chr5 (47-96)||(18515710-18515759)
chr5 (42-90)||(1156998-1157046)
chr5 (42-88)||(233491-233537)
chr5 (42-88)||(33656733-33656779)
chr5 (1-30)||(16363974-16364003)
chr5 (43-80)||(29801730-29801767)
chr5 (47-88)||(35468036-35468077)
chr5 (47-88)||(38761320-38761361)
chr5 (43-96)||(39039878-39039931)
chr5 (42-86)||(6377474-6377518)
chr5 (48-88)||(35468236-35468276)
[»] chr2 (9 HSPs)
chr2 (1-88)||(42578504-42578600)
chr2 (42-96)||(3462667-3462721)
chr2 (47-90)||(725098-725141)
chr2 (1-30)||(725169-725198)
chr2 (47-88)||(3207286-3207327)
chr2 (47-96)||(4681557-4681606)
chr2 (1-30)||(38376523-38376552)
chr2 (1-30)||(41322055-41322084)
chr2 (44-80)||(11738614-11738650)
[»] chr6 (5 HSPs)
chr6 (42-96)||(10365013-10365067)
chr6 (42-90)||(9244821-9244869)
chr6 (1-30)||(9244769-9244798)
chr6 (47-88)||(32818631-32818672)
chr6 (1-30)||(32818744-32818773)
[»] chr3 (9 HSPs)
chr3 (42-96)||(45339406-45339460)
chr3 (42-96)||(50001874-50001928)
chr3 (47-96)||(24088033-24088082)
chr3 (47-96)||(49952175-49952224)
chr3 (42-88)||(40687005-40687051)
chr3 (42-96)||(45339595-45339649)
chr3 (1-30)||(31880694-31880723)
chr3 (47-88)||(43747775-43747816)
chr3 (1-30)||(44247718-44247747)
[»] scaffold0361 (1 HSPs)
scaffold0361 (47-95)||(13888-13936)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-84)||(35981-36064)
[»] scaffold0385 (2 HSPs)
scaffold0385 (41-95)||(11822-11876)
scaffold0385 (1-30)||(11898-11927)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 170 - 429
Target Start/End: Original strand, 27758153 - 27758411
Alignment:
Q  170 tttattactttgaattaggagtactgtacacaatttcgatgaatttaataaattcacatgtatat--ttaagcttgcaagatgatcaagaagaaaaccat 267  Q
    ||||||||||||||||||||  |||||||||||||| |||||||||||   |||||||| |||||  |||||||||||| ||| ||||||||||||| ||    
T  27758153 tttattactttgaattaggaagactgtacacaattttgatgaatttaa---attcacatatatatatttaagcttgcaaaatggtcaagaagaaaactat 27758249  T
Q  268 ggactgnnnnnnnnnaaataa--gagagataatgaagaaaaaaccnnnnnnnnccgcaccatcttcaaacttgtagactaatgttttttcttcttctttt 365  Q
    ||||||         ||| ||  ||||||||||||||||||||||        ||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  27758250 ggactgattttttttaaagaaaagagagataatgaagaaaaaaccttttttt-ccgcaccatcttcaaacttgtaggctaatgtgtttt-ttcttctttt 27758347  T
Q  366 ggaatgacaaatattagtgttctgaactgggccaagccccatccactgatggaccggttgttcc 429  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  27758348 ggaatgacaaatattagtgttctgaactggcccaagccccatccactgatagaccggttgttcc 27758411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27756937 - 27757027
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga--atgtgaaaagagtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagag 89  Q
    ||||||||||||||||||||||||||||||  || |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  27756937 gaagttgtgaagagagaaataggtaagagagaatttgaaaagagtgaaaaatagagtagatttgatgaattgtttggtataagataaagag 27757027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 3547310 - 3547356
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||    
T  3547310 gtgaaaaatatagtaggtttgatgtattgtttggtataagagaaaga 3547356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 34649675 - 34649621
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||| ||||||||||| ||||||| ||||||||||| |||||||||| |||||||    
T  34649675 gtgagaaatagagtagatttgatgtattgtttggtagaagagaaagataagagaa 34649621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 38783721 - 38783675
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||| ||||| ||||| ||||||||||||||||||||||||||||||    
T  38783721 gtgagaaatatagtagatttgatgaattgtttggtataagagaaaga 38783675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 43638470 - 43638421
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||| ||||| ||||||| |||||||||||||||||||||| |||||||    
T  43638470 aaatatagtagatttgatgtattgtttggtataagagaaagaaaagagaa 43638421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 30266064 - 30266010
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||| ||||||| ||  ||||||| | ||||||||||||||||||||||||||||    
T  30266064 gtgagaaatagaataaatttgatgtagtgtttggtataagagaaagagaagagaa 30266010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 31666234 - 31666280
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||| |||||| ||||||| |||||||||||||| |||||||    
T  31666234 gtgaaaaatggagtagatttgatgtattgtttggtataaaagaaaga 31666280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 24100692 - 24100733
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||||||| || ||||||| ||||||||||||||||||||||    
T  24100692 aaatagagaagatttgatgtattgtttggtataagagaaaga 24100733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 25980814 - 25980773
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||    
T  25980814 aaatagagtagattttatgtattgtttggtataagagaaaga 25980773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 28860432 - 28860469
Alignment:
Q  43 tgaaaaatagagtaggtttgatgaattgtttggtataa 80  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  28860432 tgaaaaatagagtagatttgatggattgtttggtataa 28860469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 470198 - 470107
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagagaatgtgaaaagagtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||||||||||||| || |||||    ||||  ||||| ||||||| ||| ||||||| ||||||||||||||||||| ||||||||||    
T  470198 gaagttgtgaagagagaaatacgtgagaga----gaaagaagtgagaaatagaatagatttgatgtattgtttggtataagagaatgagaagagaa 470107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11671933 - 11671846
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagagaatgtgaaaagagtgaa--------aaatagagtaggtttgatgaattgtttggtataa 80  Q
    |||||||||||||||||||||||||||||| | ||| ||||| |||        ||||||||||| ||||||||||||||||||||||    
T  11671933 gaagttgtgaagagagaaataggtaagagagtttgagaagagagaaaaagggagaaatagagtagatttgatgaattgtttggtataa 11671846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 39121203 - 39121257
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||| ||||||||||| |||||||  |||||||||||||||||||||||| ||||    
T  39121203 gtgagaaatagagtagatttgatgggttgtttggtataagagaaagagaaaagaa 39121257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 52399338 - 52399284
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||| ||||||| ||| ||||||| | ||||||||||||||||||||||||||||    
T  52399338 gtgagaaatagaatagatttgatgtagtgtttggtataagagaaagagaagagaa 52399284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 23127392 - 23127340
Alignment:
Q  43 tgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagaga 95  Q
    ||||||||| ||||| ||||||| || |||||||| |||||||||||||||||    
T  23127392 tgaaaaataaagtagatttgatgtatggtttggtacaagagaaagagaagaga 23127340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 44502794 - 44502740
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||| ||||||||||| ||||||  ||||||||| |||||||||||| |||||||    
T  44502794 gtgagaaatagagtagatttgatagattgtttggaataagagaaagataagagaa 44502740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 56051232 - 56051286
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||| |||||| |||| ||||||| ||||||||||| |||||||||| |||||||    
T  56051232 gtgagaaatagggtagatttgatgtattgtttggtagaagagaaagataagagaa 56051286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 25052369 - 25052340
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  25052369 gaagttgtgaagagagaaataggtaagaga 25052340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 32208277 - 32208306
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  32208277 gaagttgtgaagagagaaataggtaagaga 32208306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34411344 - 34411373
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  34411344 gaagttgtgaagagagaaataggtaagaga 34411373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 34413090 - 34413061
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  34413090 gaagttgtgaagagagaaataggtaagaga 34413061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 43277452 - 43277497
Alignment:
Q  43 tgaaaaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||||||||| |||||||  ||||||| |||||||||||||    
T  43277452 tgaaaaatagagtagatttgatgggttgtttgatataagagaaaga 43277497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 49629125 - 49629096
Alignment:
Q  59 tttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||||||||||||||||||||||||    
T  49629125 tttgatgaattgtttggtataagagaaaga 49629096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 52470230 - 52470259
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  52470230 gaagttgtgaagagagaaataggtaagaga 52470259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 53448058 - 53448017
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||||| ||| ||| ||||||||||||||||||||||    
T  53448058 aaatagagtagatttaatgtattgtttggtataagagaaaga 53448017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 3563143 - 3563048
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagagaatgtgaaaagagtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||||||||||||||||||||||  |||     || || ||||||||||| ||||||| || ||||||| ||||||||||| |||||||    
T  3563143 gaagttgtgaagagagaaataggtaagagagagtgtgggaagagagaaatagagtagatttgatgtatggtttggtttaagagaaagataagagaa 3563048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 96
Target Start/End: Complemental strand, 34996812 - 34996757
Alignment:
Q  41 agtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||| ||||||||||| ||||||| |||||||||||||||||| | |||||||||    
T  34996812 agtgagaaatagagtagatttgatgtattgtttggtataagagagaaagaagagaa 34996757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 42561950 - 42561871
Alignment:
Q  9 gaagagagaaataggtaagaga--atgtgaaaagagtgaaaaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||||||||||||||| |||||  |||||||||||| ||||  |||||||| |||| ||| ||||||| |||||||||||||    
T  42561950 gaagagagaaataggtgagagagaatgtgaaaagagagaaa--tagagtagatttggtgagttgtttgatataagagaaaga 42561871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 11202381 - 11202479
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagagaatgtgaaaagagtgaaaaa---------tagagtaggtttgatgaattgtttggtataagagaaagaga 90  Q
    |||||||||||||||||||||| ||||||| | ||| ||||| ||||||         |||||||| ||||||| ||||||||||| ||||||||||||    
T  11202381 gaagttgtgaagagagaaatagataagagagtttgagaagagagaaaaaggtaagaaatagagtagatttgatggattgtttggtagaagagaaagaga 11202479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 18791140 - 18791193
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagaga 95  Q
    |||| ||||||||||| ||| ||| | |||||||||||||||||||||||||||    
T  18791140 gtgagaaatagagtagatttaatgtagtgtttggtataagagaaagagaagaga 18791193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 29222319 - 29222287
Alignment:
Q  351 ttttcttcttcttttggaatgacaaatattagt 383  Q
    |||||||||||||||||||||||||||||||||    
T  29222319 ttttcttcttcttttggaatgacaaatattagt 29222287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 33989766 - 33989723
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagaga 90  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||    
T  33989766 aaatagagtagatttgatggattgtttggtagaagagaaagaga 33989723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 40786384 - 40786342
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagaga 84  Q
    |||| ||||||||||| ||||||| ||||||||||||||||||    
T  40786384 gtgagaaatagagtagatttgatgtattgtttggtataagaga 40786342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 2088311 - 2088352
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||||| |||||||| ||||||| |||||||||||||    
T  2088311 aaatagagtagatttgatgagttgtttgatataagagaaaga 2088352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 2430612 - 2430653
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||||||| || ||||||| ||||||||||||||||||||||    
T  2430612 aaatagagaagatttgatgtattgtttggtataagagaaaga 2430653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10048304 - 10048275
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  10048304 gaagttgtgaagagagaaataggtaagaga 10048275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 33989823 - 33989794
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  33989823 gaagttgtgaagagagaaataggtaagaga 33989794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 41204011 - 41203982
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  41204011 gaagttgtgaagagagaaataggtaagaga 41203982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 41816553 - 41816582
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  41816553 gaagttgtgaagagagaaataggtaagaga 41816582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 43637370 - 43637411
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||||| |||||||  |||||||||||||||||||||    
T  43637370 aaatagagtagatttgatgggttgtttggtataagagaaaga 43637411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 46290443 - 46290472
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  46290443 gaagttgtgaagagagaaataggtaagaga 46290472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33614103 - 33614151
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagagaatgtgaaaagagtgaaaaa 49  Q
    ||||||||||||||||||||| ||||||||   ||||||||| ||||||    
T  33614103 gaagttgtgaagagagaaatatgtaagagagaatgaaaagagagaaaaa 33614151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 40718390 - 40718438
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagaga 95  Q
    ||||| ||||| ||||| | |||||||||| ||||||||||||||||||    
T  40718390 aaatatagtagatttgaggtattgtttggtttaagagaaagagaagaga 40718438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 49024170 - 49024198
Alignment:
Q  2 aagttgtgaagagagaaataggtaagaga 30  Q
    |||||||||||||||||||||||||||||    
T  49024170 aagttgtgaagagagaaataggtaagaga 49024198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 29232601 - 29232558
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagaga 90  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  29232601 aaatagagtagatttgatgaattgtttggtataagagaaagaga 29232558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43361536 - 43361442
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagagaatgtgaaaagagtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagaga 95  Q
    ||||||||||||||||||||||||||||||  |||     || || ||||||||||  ||||||| |||||||||| ||||||||| ||||||||    
T  43361536 gaagttgtgaagagagaaataggtaagagagagtgtgggaagagagaaatagagtaaatttgatgtattgtttggtttaagagaaaaagaagaga 43361442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 26940402 - 26940348
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||| ||||||||||| ||||||| ||||||||||| |||||||||| |||||||    
T  26940402 gtgagaaatagagtagatttgatgtattgtttggtagaagagaaagataagagaa 26940348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 5187027 - 5187076
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||| ||| ||| |||||||||||||| |||||||||||||||    
T  5187027 aaatagagtagatttaatgtattgtttggtataaaagaaagagaagagaa 5187076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 43360349 - 43360398
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||| ||||||| |||||||||| ||||||||||| |||||||    
T  43360349 aaatagagtagatttgatgtattgtttggtttaagagaaagataagagaa 43360398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 12633193 - 12633139
Alignment:
Q  41 agtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagaga 95  Q
    ||||| ||||| ||||| |||| || | |||||||||||||||||||||||||||    
T  12633193 agtgagaaatatagtagatttggtgtagtgtttggtataagagaaagagaagaga 12633139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 46085594 - 46085640
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||||||||||||||| ||| |||  |||||||||||||||||||||    
T  46085594 gtgaaaaatagagtagatttaatgggttgtttggtataagagaaaga 46085640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10617354 - 10617325
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  10617354 gaagttgtgaagagagaaataggtaagaga 10617325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 19067309 - 19067358
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||| |||||||  ||||||||| |||||||| ||||||||||    
T  19067309 aaatagagtagatttgatgtgttgtttggtgtaagagaatgagaagagaa 19067358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 19115199 - 19115248
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||| |||||||  ||||||||| |||||||| ||||||||||    
T  19115199 aaatagagtagatttgatgtgttgtttggtgtaagagaatgagaagagaa 19115248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 23201972 - 23201923
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||| ||||||| ||| |||||| ||||||||||| |||||||    
T  23201972 aaatagagtagatttgatgtattctttggtttaagagaaagataagagaa 23201923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 23202029 - 23202000
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  23202029 gaagttgtgaagagagaaataggtaagaga 23202000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 29733321 - 29733292
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  29733321 gaagttgtgaagagagaaataggtaagaga 29733292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38674191 - 38674220
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  38674191 gaagttgtgaagagagaaataggtaagaga 38674220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 41318478 - 41318519
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||||| |||||||| ||||||| |||||||||||||    
T  41318478 aaatagagtagatttgatgagttgtttgatataagagaaaga 41318519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 30720930 - 30720958
Alignment:
Q  2 aagttgtgaagagagaaataggtaagaga 30  Q
    |||||||||||||||||||||||||||||    
T  30720930 aagttgtgaagagagaaataggtaagaga 30720958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 46614534 - 46614486
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagaga 95  Q
    ||||||||||| |||||||  ||||||||| ||||||||| ||||||||    
T  46614534 aaatagagtagatttgatgtgttgtttggtttaagagaaatagaagaga 46614486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 13760971 - 13761020
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  13760971 aaatagagtagatttgatggattgtttggtacaagagaaagagaagagaa 13761020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 18515710 - 18515759
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||| ||| ||| |||||||||||||| |||||||||||||||    
T  18515710 aaatagagtagatttaatgtattgtttggtataaaagaaagagaagagaa 18515759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 1157046 - 1156998
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagaga 90  Q
    |||| ||||||||||| ||||||| || |||||||||||||||||||||    
T  1157046 gtgagaaatagagtagatttgatgtatagtttggtataagagaaagaga 1156998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 233491 - 233537
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||| ||||||||||| ||||| | ||||||||||||||||||||||    
T  233491 gtgagaaatagagtagatttgagggattgtttggtataagagaaaga 233537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 33656733 - 33656779
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||| ||||||||||| ||||| ||| ||||||||||||||||||||    
T  33656733 gtgagaaatagagtagatttgaagaactgtttggtataagagaaaga 33656779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 16364003 - 16363974
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  16364003 gaagttgtgaagagagaaataggtaagaga 16363974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 29801730 - 29801767
Alignment:
Q  43 tgaaaaatagagtaggtttgatgaattgtttggtataa 80  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  29801730 tgaaaaatagagtagatttgatgtattgtttggtataa 29801767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 35468077 - 35468036
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||||||| || ||||||| ||||||||||||||||||||||    
T  35468077 aaatagagaagatttgatgtattgtttggtataagagaaaga 35468036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 38761361 - 38761320
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||||| |||||||  |||||||||||||||||||||    
T  38761361 aaatagagtagatttgatgggttgtttggtataagagaaaga 38761320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 39039878 - 39039931
Alignment:
Q  43 tgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||||||  ||||||  || |||| ||||||||||||||||||||||    
T  39039878 tgaaaaatagagtaaatttgatttatggtttagtataagagaaagagaagagaa 39039931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 6377474 - 6377518
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaa 86  Q
    ||||||||||||| || |||||||  |||||||||||||||||||    
T  6377474 gtgaaaaatagaggagatttgatgtgttgtttggtataagagaaa 6377518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 35468236 - 35468276
Alignment:
Q  48 aatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||||||||| |||||||  |||||||||||||||||||||    
T  35468236 aatagagtagatttgatgggttgtttggtataagagaaaga 35468276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 42578600 - 42578504
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagagaatgtgaaaagagtgaaa---------aatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||||||||||||||||||||||||||||| | ||| ||||| ||||         |||||||||| ||||| | ||||||||||||||||||||||    
T  42578600 gaagttgtgaagagagaaataggtaagagagtatgagaagagagaaagaggtgagaaatagagtagctttgagggattgtttggtataagagaaaga 42578504  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 3462667 - 3462721
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||| ||||||| ||| ||||||| | ||||||||||||||||||||||||||||    
T  3462667 gtgagaaatagaatagatttgatgtagtgtttggtataagagaaagagaagagaa 3462721  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 725141 - 725098
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagaga 90  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||    
T  725141 aaatagagtagatttgatggattgtttggtagaagagaaagaga 725098  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 725198 - 725169
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  725198 gaagttgtgaagagagaaataggtaagaga 725169  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 3207286 - 3207327
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||    
T  3207286 aaatagagtagatttgatgtattgtttggtagaagagaaaga 3207327  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 4681557 - 4681606
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||| |||||||  ||||||||||||||||| | |||||||||    
T  4681557 aaatagagtagatttgatgtgttgtttggtataagagagatagaagagaa 4681606  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 38376552 - 38376523
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  38376552 gaagttgtgaagagagaaataggtaagaga 38376523  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 41322084 - 41322055
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  41322084 gaagttgtgaagagagaaataggtaagaga 41322055  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 11738614 - 11738650
Alignment:
Q  44 gaaaaatagagtaggtttgatgaattgtttggtataa 80  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  11738614 gaaaaatagagtagatttgatggattgtttggtataa 11738650  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 10365013 - 10365067
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||| ||||| ||||| ||||||| ||||||||||||||||||||||||| ||||    
T  10365013 gtgagaaataaagtagatttgatggattgtttggtataagagaaagagaaaagaa 10365067  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 9244821 - 9244869
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagaga 90  Q
    |||| |||| |||||| |||||||| |||||||||||||||||||||||    
T  9244821 gtgagaaattgagtagatttgatgagttgtttggtataagagaaagaga 9244869  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 9244769 - 9244798
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  9244769 gaagttgtgaagagagaaataggtaagaga 9244798  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 32818672 - 32818631
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    ||||||||||| |||||||  |||||||||||||||||||||    
T  32818672 aaatagagtagatttgatgggttgtttggtataagagaaaga 32818631  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 32818744 - 32818773
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  32818744 gaagttgtgaagagagaaataggtaagaga 32818773  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 45339460 - 45339406
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||||||||||||||| ||||||| ||||||||| || ||||||||| |||||||    
T  45339460 gtgaaaaatagagtagatttgatggattgtttggaatgagagaaagataagagaa 45339406  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 50001928 - 50001874
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||| ||||||||||| ||||||| ||||||||||| |||||||||| |||||||    
T  50001928 gtgagaaatagagtagatttgatgtattgtttggtagaagagaaagataagagaa 50001874  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 24088082 - 24088033
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||| ||||| ||||||| |||||||||||||||||||| |||||||||    
T  24088082 aaatatagtagatttgatggattgtttggtataagagaaatagaagagaa 24088033  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 49952224 - 49952175
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    ||||||||||| |||||||| ||||||| ||||||||||| |||||||||    
T  49952224 aaatagagtagatttgatgagttgtttgatataagagaaatagaagagaa 49952175  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 40687051 - 40687005
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||| ||||| ||||| ||||||| ||||||||||||||||||||||    
T  40687051 gtgagaaatatagtagatttgatgtattgtttggtataagagaaaga 40687005  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 45339649 - 45339595
Alignment:
Q  42 gtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagagaa 96  Q
    |||||||||||||||| |||| || ||||||||| || ||||||||| |||||||    
T  45339649 gtgaaaaatagagtagatttggtggattgtttggaatgagagaaagataagagaa 45339595  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 31880694 - 31880723
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  31880694 gaagttgtgaagagagaaataggtaagaga 31880723  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 43747775 - 43747816
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaaga 88  Q
    |||||||| || ||||||| ||||||||||||||||||||||    
T  43747775 aaatagagaagatttgatgtattgtttggtataagagaaaga 43747816  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 44247747 - 44247718
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  44247747 gaagttgtgaagagagaaataggtaagaga 44247718  T

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Target: scaffold0361 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 13936 - 13888
Alignment:
Q  47 aaatagagtaggtttgatgaattgtttggtataagagaaagagaagaga 95  Q
    ||||||||||| ||||| | |||||||||| ||||||||||||||||||    
T  13936 aaatagagtagatttgaggtattgtttggtttaagagaaagagaagaga 13888  T

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Target: scaffold0069 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35981 - 36064
Alignment:
Q  1 gaagttgtgaagagagaaataggt--aagagaatgtgaaaagagtgaaaaatagagtaggtttgatgaattgtttggtataagaga 84  Q
    ||||||||||||||||||||||||   |||||| |||| ||||  || ||||||||||  |||||||  |||||||||||||||||    
T  35981 gaagttgtgaagagagaaataggtgagagagaaggtgagaaga--gagaaatagagtaaatttgatgtgttgtttggtataagaga 36064  T

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Target: scaffold0385 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 95
Target Start/End: Complemental strand, 11876 - 11822
Alignment:
Q  41 agtgaaaaatagagtaggtttgatgaattgtttggtataagagaaagagaagaga 95  Q
    ||||| ||||||||||| |||||||  |||||||||| |||||||||| ||||||    
T  11876 agtgagaaatagagtagatttgatgggttgtttggtagaagagaaagataagaga 11822  T

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Target: scaffold0385; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11927 - 11898
Alignment:
Q  1 gaagttgtgaagagagaaataggtaagaga 30  Q
    ||||||||||||||||||||||||||||||    
T  11927 gaagttgtgaagagagaaataggtaagaga 11898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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