View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14077_high_5 (Length: 354)
Name: NF14077_high_5
Description: NF14077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14077_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 3 - 338
Target Start/End: Original strand, 4195636 - 4195971
Alignment:
| Q |
3 |
atcaggttatggttaaccggaaatggaatcagtttatgcagattctttctggtaatgttcttgctggtataagcattgaatggtggaaatggaatcataa |
102 |
Q |
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| T |
4195636 |
atcaggttatggttaaccggaaatggaatcagtttatgcagattctttctggtaatgttcttgctggtataagcattgaatggtggaaatggaatcataa |
4195735 |
T |
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| Q |
103 |
tgcacaccatcttgcttgtaatagtcttgattttgatcctgatcttcaacatttaccnnnnnnngttgtttcctccaagttcttcacttcactaacttct |
202 |
Q |
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| T |
4195736 |
tgcacaccatcttgcttgtaatagtcttgattttgatcctgatcttcaacatttacctttttttgttgtttcctccaagttcttcacttcactaacttct |
4195835 |
T |
|
| Q |
203 |
tgtttttatggaagaaagatgaattttgattcttttgctaggttcttggttagttaccagcattggagttattatcctgttatgtgttttgctaggctta |
302 |
Q |
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| T |
4195836 |
tgtttttatggaagaaagatgaattttgattcttttgctaggttcttggttagttaccagcattggagttattatcctgttatgtgttttgctaggctta |
4195935 |
T |
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| Q |
303 |
atttgtttgctcaatctttctttttgttgttttcta |
338 |
Q |
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| T |
4195936 |
atttgtttgctcaatctttctttttgttgttttcta |
4195971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 41 - 321
Target Start/End: Original strand, 4186642 - 4186922
Alignment:
| Q |
41 |
cagattctttctggtaatgttcttgctggtataagcattgaatggtggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattttgatc |
140 |
Q |
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| T |
4186642 |
cagatcctttctggaaattttctttctagtataagcatggagtggtggaaatggaaccacaatgcacaccaccttgcttgtaatagtcttgattttgacc |
4186741 |
T |
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| Q |
141 |
ctgatcttcaacatttaccnnnnnnngttgtttcctccaagttcttcacttcactaacttcttgtttttatggaagaaagatgaattttgattcttttgc |
240 |
Q |
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|||| |||||||||||||| ||||| || || |||||||| |||||||| |||||||||||| ||| || |||||||| |||||||||||||| |
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| T |
4186742 |
ctgaccttcaacatttacccttttttgttgtctcttcaaagttctttacttcactcacttcttgttttcatgataggaagatgaactttgattcttttgc |
4186841 |
T |
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| Q |
241 |
taggttcttggttagttaccagcattggagttattatcctgttatgtgttttgctaggcttaatttgtttgctcaatcttt |
321 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||| ||| ||||| |||||| | ||||||||||||| |||||| |
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| T |
4186842 |
taggttcttggttagttaccaacattggagttattgtcctggtatatgtttagctaggttcaatttgtttgctcgatcttt |
4186922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 24417427 - 24417348
Alignment:
| Q |
66 |
ctggtataagcattgaatggtggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgat |
145 |
Q |
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|||||||||| |||| ||||||||||||| ||||||||| || ||| ||||||| ||||||||||||| |||||||||| |
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| T |
24417427 |
ctggtataagtattgcttggtggaaatggactcataatgctcatcatattgcttgcaatagtcttgattatgatcctgat |
24417348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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