View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14077_low_1 (Length: 547)

Name: NF14077_low_1
Description: NF14077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14077_low_1
NF14077_low_1
[»] chr2 (29 HSPs)
chr2 (11-530)||(44957441-44957961)
chr2 (30-165)||(13060392-13060526)
chr2 (24-165)||(14104528-14104668)
chr2 (26-122)||(1935012-1935108)
chr2 (26-122)||(10160743-10160839)
chr2 (26-112)||(29677371-29677457)
chr2 (26-123)||(7737870-7737967)
chr2 (26-122)||(9180743-9180839)
chr2 (11-87)||(12796939-12797016)
chr2 (26-122)||(30650909-30651005)
chr2 (11-90)||(25478301-25478381)
chr2 (11-122)||(30631559-30631670)
chr2 (11-122)||(31326719-31326830)
chr2 (26-122)||(9189822-9189918)
chr2 (26-90)||(18344442-18344507)
chr2 (26-122)||(19892485-19892581)
chr2 (26-122)||(28603278-28603374)
chr2 (28-112)||(29677757-29677841)
chr2 (26-90)||(30658274-30658339)
chr2 (28-87)||(19578435-19578495)
chr2 (26-122)||(42926778-42926876)
chr2 (26-112)||(25497344-25497430)
chr2 (26-90)||(35601933-35601998)
chr2 (26-90)||(35639016-35639081)
chr2 (28-123)||(21523985-21524080)
chr2 (26-90)||(21523739-21523803)
chr2 (64-165)||(41559078-41559178)
chr2 (42-122)||(19094531-19094610)
chr2 (26-81)||(40847614-40847670)
[»] chr1 (29 HSPs)
chr1 (24-160)||(36724650-36724786)
chr1 (24-165)||(12906091-12906232)
chr1 (11-165)||(27761843-27761996)
chr1 (24-166)||(31063892-31064034)
chr1 (31-158)||(32987185-32987311)
chr1 (24-166)||(33380938-33381081)
chr1 (11-163)||(24159803-24159954)
chr1 (24-166)||(23193240-23193382)
chr1 (26-165)||(2493837-2493976)
chr1 (26-123)||(47451244-47451341)
chr1 (26-122)||(23192836-23192932)
chr1 (26-122)||(26927741-26927837)
chr1 (29-122)||(3094094-3094187)
chr1 (11-112)||(18784553-18784653)
chr1 (26-122)||(10135436-10135532)
chr1 (28-81)||(25661844-25661897)
chr1 (26-90)||(33301199-33301264)
chr1 (26-88)||(12260009-12260072)
chr1 (26-112)||(19799032-19799118)
chr1 (43-122)||(25855151-25855229)
chr1 (26-112)||(39588386-39588472)
chr1 (26-122)||(10140069-10140165)
chr1 (30-122)||(40165960-40166052)
chr1 (26-123)||(47455405-47455502)
chr1 (26-90)||(16649632-16649696)
chr1 (11-54)||(28858067-28858110)
chr1 (135-165)||(28858159-28858189)
chr1 (26-79)||(51041482-51041535)
chr1 (27-124)||(2290788-2290885)
[»] chr3 (35 HSPs)
chr3 (24-165)||(48432346-48432486)
chr3 (11-163)||(48435832-48435983)
chr3 (11-165)||(4662120-4662275)
chr3 (25-165)||(16982930-16983071)
chr3 (26-122)||(23666142-23666238)
chr3 (26-122)||(24038390-24038486)
chr3 (26-111)||(39775747-39775832)
chr3 (26-122)||(3418973-3419069)
chr3 (26-122)||(3672564-3672660)
chr3 (26-122)||(3692596-3692692)
chr3 (26-122)||(7571237-7571333)
chr3 (26-90)||(8883179-8883244)
chr3 (26-90)||(12965892-12965957)
chr3 (26-122)||(18467203-18467299)
chr3 (27-122)||(3033622-3033717)
chr3 (28-164)||(28243530-28243665)
chr3 (26-122)||(758387-758483)
chr3 (26-122)||(8887908-8888004)
chr3 (27-122)||(12112661-12112756)
chr3 (42-122)||(29350218-29350297)
chr3 (28-122)||(3657261-3657355)
chr3 (11-77)||(32474684-32474751)
chr3 (26-108)||(55431307-55431389)
chr3 (28-130)||(21100036-21100137)
chr3 (26-122)||(8069658-8069753)
chr3 (26-122)||(14438714-14438810)
chr3 (26-112)||(20520042-20520128)
chr3 (26-122)||(18471986-18472081)
chr3 (26-122)||(49971443-49971539)
chr3 (27-81)||(1641092-1641147)
chr3 (26-79)||(19276939-19276993)
chr3 (28-90)||(25726815-25726877)
chr3 (26-90)||(12971652-12971717)
chr3 (26-66)||(23661483-23661524)
chr3 (49-122)||(27708856-27708928)
[»] chr5 (35 HSPs)
chr5 (24-165)||(18265522-18265664)
chr5 (17-165)||(1286276-1286422)
chr5 (26-122)||(556675-556771)
chr5 (26-122)||(561447-561543)
chr5 (26-122)||(3665912-3666008)
chr5 (26-122)||(26667252-26667348)
chr5 (26-122)||(26938849-26938945)
chr5 (26-122)||(29167992-29168088)
chr5 (26-90)||(32461568-32461633)
chr5 (26-122)||(35679894-35679989)
chr5 (26-122)||(7451738-7451834)
chr5 (26-122)||(10759839-10759934)
chr5 (11-90)||(11981284-11981362)
chr5 (26-90)||(12103036-12103101)
chr5 (28-163)||(25215247-25215381)
chr5 (28-163)||(25279398-25279532)
chr5 (26-122)||(36942284-36942380)
chr5 (26-122)||(42001414-42001510)
chr5 (27-122)||(12102851-12102946)
chr5 (11-90)||(36423648-36423728)
chr5 (26-112)||(36428699-36428785)
chr5 (26-112)||(39523039-39523125)
chr5 (26-122)||(12045158-12045254)
chr5 (26-90)||(12501918-12501983)
chr5 (26-90)||(36937530-36937595)
chr5 (26-122)||(37248814-37248910)
chr5 (26-90)||(40147906-40147971)
chr5 (26-122)||(41996645-41996741)
chr5 (11-122)||(37652834-37652945)
chr5 (26-112)||(39518400-39518486)
chr5 (27-112)||(6155439-6155524)
chr5 (26-81)||(6514620-6514676)
chr5 (26-90)||(12041951-12042016)
chr5 (26-86)||(15414900-15414961)
chr5 (26-90)||(41587179-41587244)
[»] chr4 (35 HSPs)
chr4 (11-165)||(16595938-16596094)
chr4 (11-165)||(33722924-33723077)
chr4 (24-165)||(15020483-15020625)
chr4 (24-153)||(20513055-20513184)
chr4 (24-169)||(40684848-40684993)
chr4 (24-130)||(2575273-2575379)
chr4 (26-122)||(5271438-5271534)
chr4 (26-122)||(13522011-13522107)
chr4 (26-122)||(31269014-31269110)
chr4 (26-122)||(31273501-31273597)
chr4 (11-131)||(42758759-42758879)
chr4 (26-122)||(37259896-37259992)
chr4 (28-165)||(55081724-55081854)
chr4 (17-112)||(33468983-33469078)
chr4 (26-112)||(37264583-37264669)
chr4 (30-90)||(8030499-8030560)
chr4 (26-122)||(16421009-16421105)
chr4 (26-90)||(31765897-31765962)
chr4 (27-122)||(13059390-13059485)
chr4 (11-112)||(12878229-12878330)
chr4 (11-112)||(55251710-55251810)
chr4 (26-90)||(12823914-12823979)
chr4 (11-87)||(19106633-19106710)
chr4 (24-156)||(39991894-39992027)
chr4 (27-90)||(5928239-5928303)
chr4 (26-112)||(8693701-8693787)
chr4 (26-122)||(13065787-13065883)
chr4 (30-122)||(19906231-19906323)
chr4 (26-90)||(31729406-31729471)
chr4 (32-112)||(51696992-51697072)
chr4 (42-112)||(33463392-33463461)
chr4 (27-79)||(16953107-16953160)
chr4 (43-112)||(48276681-48276749)
chr4 (26-122)||(51697897-51697993)
chr4 (42-87)||(52691091-52691136)
[»] chr8 (32 HSPs)
chr8 (24-162)||(19954211-19954350)
chr8 (27-165)||(4544271-4544410)
chr8 (28-159)||(19949760-19949892)
chr8 (24-165)||(34517179-34517318)
chr8 (11-165)||(2469910-2470065)
chr8 (24-164)||(27236356-27236497)
chr8 (26-122)||(1807452-1807548)
chr8 (26-112)||(31449885-31449971)
chr8 (26-122)||(33416527-33416623)
chr8 (26-122)||(44925942-44926038)
chr8 (26-121)||(40125904-40125999)
chr8 (26-88)||(17953892-17953955)
chr8 (26-112)||(34118456-34118542)
chr8 (26-112)||(36683569-36683655)
chr8 (26-138)||(19166597-19166710)
chr8 (26-90)||(15875687-15875752)
chr8 (26-122)||(17025915-17026011)
chr8 (26-122)||(17556407-17556503)
chr8 (26-122)||(18876386-18876481)
chr8 (68-165)||(30777026-30777122)
chr8 (42-122)||(40130722-40130801)
chr8 (15-94)||(20072105-20072184)
chr8 (29-122)||(4238337-4238430)
chr8 (26-122)||(24090607-24090703)
chr8 (27-90)||(2965641-2965705)
chr8 (29-112)||(4243076-4243159)
chr8 (26-90)||(1910988-1911053)
chr8 (26-122)||(28559673-28559769)
chr8 (26-81)||(43302737-43302794)
chr8 (23-93)||(7145824-7145894)
chr8 (26-122)||(23548651-23548747)
chr8 (26-81)||(29220284-29220340)
[»] scaffold0018 (1 HSPs)
scaffold0018 (24-160)||(171732-171869)
[»] chr7 (24 HSPs)
chr7 (2-165)||(6898351-6898514)
chr7 (28-165)||(29478176-29478314)
chr7 (27-125)||(1289353-1289451)
chr7 (26-122)||(9650986-9651082)
chr7 (26-112)||(4579498-4579584)
chr7 (17-90)||(8268304-8268378)
chr7 (26-90)||(8076061-8076126)
chr7 (26-90)||(23866079-23866144)
chr7 (26-122)||(26341179-26341275)
chr7 (26-122)||(4930213-4930309)
chr7 (26-90)||(23246952-23247017)
chr7 (26-122)||(44510696-44510792)
chr7 (24-165)||(23616399-23616544)
chr7 (26-112)||(27238232-27238318)
chr7 (26-90)||(12254090-12254155)
chr7 (26-90)||(42627216-42627281)
chr7 (26-77)||(6591002-6591054)
chr7 (30-112)||(44423160-44423242)
chr7 (17-122)||(3357642-3357747)
chr7 (24-79)||(25832652-25832708)
chr7 (26-112)||(13314255-13314341)
chr7 (56-122)||(10388415-10388480)
chr7 (42-112)||(25543398-25543467)
chr7 (26-122)||(29150914-29151010)
[»] chr6 (25 HSPs)
chr6 (21-165)||(35129566-35129709)
chr6 (24-165)||(14041627-14041768)
chr6 (23-163)||(32815079-32815220)
chr6 (26-122)||(6407879-6407975)
chr6 (27-112)||(29892281-29892366)
chr6 (26-90)||(11570768-11570833)
chr6 (11-123)||(12688950-12689062)
chr6 (11-90)||(33687607-33687687)
chr6 (26-87)||(21309045-21309107)
chr6 (26-122)||(2700125-2700221)
chr6 (30-122)||(19674293-19674385)
chr6 (26-81)||(16836175-16836231)
chr6 (102-165)||(7499228-7499291)
chr6 (26-112)||(11614111-11614197)
chr6 (26-79)||(25316585-25316639)
chr6 (26-79)||(26204079-26204133)
chr6 (26-82)||(17964578-17964635)
chr6 (30-112)||(8747772-8747854)
chr6 (24-79)||(12714243-12714298)
chr6 (71-113)||(21795720-21795762)
chr6 (42-90)||(11428054-11428103)
chr6 (25-54)||(14775632-14775661)
chr6 (25-54)||(29610934-29610963)
chr6 (136-165)||(29610986-29611015)
chr6 (42-90)||(13736714-13736762)
[»] scaffold0352 (1 HSPs)
scaffold0352 (26-122)||(7084-7180)
[»] scaffold0182 (1 HSPs)
scaffold0182 (26-122)||(9906-10002)
[»] scaffold0012 (1 HSPs)
scaffold0012 (26-90)||(166105-166170)
[»] scaffold0002 (2 HSPs)
scaffold0002 (26-122)||(4054-4150)
scaffold0002 (26-74)||(443963-444011)
[»] scaffold0054 (1 HSPs)
scaffold0054 (26-112)||(25389-25475)
[»] scaffold0057 (1 HSPs)
scaffold0057 (26-86)||(35649-35710)
[»] scaffold0045 (1 HSPs)
scaffold0045 (28-122)||(83046-83140)
[»] scaffold0128 (1 HSPs)
scaffold0128 (28-84)||(13289-13346)
[»] scaffold2020 (1 HSPs)
scaffold2020 (26-113)||(360-447)
[»] scaffold0009 (1 HSPs)
scaffold0009 (26-113)||(165048-165135)


Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 11 - 530
Target Start/End: Original strand, 44957441 - 44957961
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagt 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||    
T  44957441 ttatcctggagatgtcgtggttgatagtctgcttgcacaattttttgcagtgccacaaaacgtcttaaagagaacgacctagtccatgactcagcctagt 44957540  T
Q  111 aatatcttcggtgacaaaaatgattttttaactaattttgactattgttccaaca-ttatgattgttagagataaggacattttgcaaatgtgtgcaaaa 209  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  44957541 aatctcttcggtgacaaaaataattttttaactaattttgactattgttccaacagttatgattgttagagatatggacattttgcaaatgtgtgcaaaa 44957640  T
Q  210 caaaaatgttcctagaggatcaggcaaaacaaatgttgaagcttacatggttgaagatgaaagtgattatggatataatcatattcttctcatatcaaca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44957641 caaaaatgttcctagaggatcaggcaaaacaaatgttgaagcttacatggttgaagatgaaagtgattatggatataatcatattcttctcatatcaaca 44957740  T
Q  310 actaattatgaattgggtaacactgatgattggtatttggaaacaagatgttgaaatcatatgacaagtcataaagaatggcttataatattttgatgaa 409  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44957741 actaattatgaattgggtaacactgatgattggtatttggacacgagatgttgaaatcatatgacaagtcataaagaatggcttataatattttgatgaa 44957840  T
Q  410 accagaaaaaaccaagattagatttgcagataattggactattccatcagagagagtaggaaaggaaatgtgctcatcaaaggcaagcatggacacaagg 509  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44957841 accagaaaaaaccaagattagatttgcagataattggaccattccatcagagagagtaggaaaggaaatgtgctcatcaaaggcaagcatggacacaagg 44957940  T
Q  510 aaatcattacatgggtgatct 530  Q
    |||||||||||||||||||||    
T  44957941 aaatcattacatgggtgatct 44957961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 13060392 - 13060526
Alignment:
Q  30 gttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaaaa 129  Q
    ||||||||||| ||| ||||||||||||| |||| ||||| |||||||| |||||||||||| |||||||||||||||| |||| |||||||||||| ||    
T  13060392 gttgatagtcttctttcacaatttttggcggtgcaacaaatcgtcttaatgaaagcgacctagtccgtgactcagcctaataatgtcttcggtgacataa 13060491  T
Q  130 atgattttttaactaattttgactattgttccaaca 165  Q
    |  | ||||||||||||||||||||||||| |||||    
T  13060492 aata-tttttaactaattttgactattgtttcaaca 13060526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 14104668 - 14104528
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    ||||||||||||||| || ||||||||||||  |||||| ||| |||||||||||||| ||||||||| |||| |||||||||||||||| | |||| ||    
T  14104668 gtcgtggttgatagtttgtttgcacaattttgagcagtgacacgaaacgtcttaaagagagcgacctagtccgcgactcagcctagtaatttgttcgatg 14104569  T
Q  124 acaaaaatgattttttaactaattttgactattgttccaaca 165  Q
    ||| |||  | |||||||||||||||||||||||||||||||    
T  14104568 acagaaaata-tttttaactaattttgactattgttccaaca 14104528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 1935012 - 1935108
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  1935012 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 1935108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 10160743 - 10160839
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  10160743 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 10160839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 29677457 - 29677371
Alignment:
Q  26 cgtggttgatagtctgctt-gcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| |||||| | || ||||||||| ||||||||    
T  29677457 cgtggttgatagtctgctttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacatgat-cgtgactcaacctagtaa 29677371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 7737870 - 7737967
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||| |  | ||||||||| |||||||| | ||||||||    
T  7737870 cgtggttgatagtctgtcttgcacaattttgggcagtgccacaaaacttcttaaagagagcgacatggt-cgtgactcaacctagtaacaacttcggtg 7737967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 9180743 - 9180839
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| | ||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  9180743 cgtggttgatagtctgccttgcacaattttggacagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 9180839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 12797016 - 12796939
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcga 87  Q
    |||| ||||||| | |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||    
T  12797016 ttatcctggagacggcgtggttgatagtctgtcttgaacaattttgggcagtgccacaaaacgtcttaaagagagcga 12796939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 30651005 - 30650909
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||| ||  | ||||||||| |||||||| | |||||||    
T  30651005 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgatctggt-cgtgactcaacctagtaacaacttcggt 30650909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 25478301 - 25478381
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||  | ||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||| ||||||||    
T  25478301 ttattctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgtcacgaaacgtcttaaagagagcgacct 25478381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 30631670 - 30631559
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctag 109  Q
    |||| |||||| || |||||||||||||||  |||||||||||||||||| |||||| ||| || ||||||| || |||||||| ||||||||| |||||    
T  30631670 ttatcctggaggtggcgtggttgatagtctttcttgcacaatttttggcaatgccacgaaaagttttaaagagagtgacctaat-cgtgactcaacctag 30631572  T
Q  110 taatatcttcggt 122  Q
    ||| | |||||||    
T  30631571 taacaacttcggt 30631559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 31326830 - 31326719
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctag 109  Q
    |||| |||||| || ||||||||||||||||| |||||||||||| ||||||| ||  |||||||||||||| ||||||||  | ||||||||| |||||    
T  31326830 ttatcctggaggtggcgtggttgatagtctgccttgcacaattttgggcagtggcatgaaacgtcttaaagagagcgacctggt-cgtgactcaacctag 31326732  T
Q  110 taatatcttcggt 122  Q
    ||| | |||||||    
T  31326731 taacaacttcggt 31326719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 9189822 - 9189918
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| | ||||||||| |||||||||||||| ||| ||||  | ||||||||| |||||||| | |||||||    
T  9189822 cgtggttgatagtctgccttgcacaattttggacagtgccacgaaacgtcttaaagagagcaacctggt-cgtgactcaacctagtaacaacttcggt 9189918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 18344507 - 18344442
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  18344507 cgtggttaatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacct 18344442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 19892485 - 19892581
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||  |||||||||||| | ||||||||  |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  19892485 cgtggttgatagtctgtgttgcacaattttggacagtgccaggaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 19892581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 28603374 - 28603278
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||||||||||||| | ||||| ||| |||||| ||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  28603374 cgtggttgatagtctgtcttgcacaattttggacagtgtcacgaaacgttttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 28603278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 112
Target Start/End: Complemental strand, 29677841 - 29677757
Alignment:
Q  28 tggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||| ||| |||||||||||||||||||||||| ||| ||||||| || ||||||||  | ||||||||| ||||||||    
T  29677841 tggttgatagtttgccttgcacaatttttggcagtgccactaaatgtcttaatgagagcgacctggt-cgtgactcaacctagtaa 29677757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 30658339 - 30658274
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||||||| ||||||||||||  | |||||||| |||||||||||||| ||||||||    
T  30658339 cgtggttgatagtctgccttgcacaattttgagtagtgccacgaaacgtcttaaagagagcgacct 30658274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 19578435 - 19578495
Alignment:
Q  28 tggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcga 87  Q
    ||||||||||||| | |||||||||||| || ||||||||||||||||||||||| |||||    
T  19578435 tggttgatagtcttccttgcacaattttaggtagtgccacaaaacgtcttaaagagagcga 19578495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 42926778 - 42926876
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaac--gtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||| | |||||||||||| ||||||||||| ||||  |||||||||| |||| ||| || ||||||||| |||||||| | |||||||    
T  42926778 cgtggttgatagtctaccttgcacaattttgggcagtgccacgaaacgtgtcttaaagagagcggcctgat-cgtgactcaacctagtaacaacttcggt 42926876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 25497344 - 25497430
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||||||||||||||| ||||||||| ||| |||||||  || |||||||||||||| ||||||||  | ||||||||| ||||||||    
T  25497344 cgtggttgatagtctgacttgcacaaatttgggcagtgttacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 25497430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 35601998 - 35601933
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||| |||| ||||||||||||| | ||||||||| |||||||||||| | ||||||||    
T  35601998 cgtggttgatactctgtcttgcacaattttggacagtgccacgaaacgtcttaaaaagagcgacct 35601933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 35639016 - 35639081
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||  ||| ||||||||||||| ||||||||||| |||||||||||| | ||||||||    
T  35639016 cgtggttgatacgctgtcttgcacaattttgggcagtgccacgaaacgtcttaaaaagagcgacct 35639081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 21523985 - 21524080
Alignment:
Q  28 tggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||| |||||||||||||||| ||| ||||||||||| ||  || ||||||| |  |||||| | || |||||| ||||| ||| |||||||||    
T  21523985 tggttgttagtctgcttgcacaaatttgggcagtgccacgaatagttttaaagagaaggacctagtacgcgactcatcctagaaatttcttcggtg 21524080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 21523739 - 21523803
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||||| | |||||||||||| ||||||||||| |||||| ||||||| ||| ||||    
T  21523739 cgtggttgatagtctcccttgcacaattttgggcagtgccacgaaacgt-ttaaagatagcaacct 21523803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 41559078 - 41559178
Alignment:
Q  64 cacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaaaaatgattttttaactaattttgactattgttccaa 163  Q
    |||||||||| ||||||| |||||| ||||||| |||||| |||| |||| |||| | ||||  |||  |||||| |||||||||| | | |||||||||    
T  41559078 cacaaaacgttttaaagagagcgacataatccgcgactca-cctaataatctctttgatgactgaaaatatttttgaactaattttaaattttgttccaa 41559176  T
Q  164 ca 165  Q
    ||    
T  41559177 ca 41559178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 19094531 - 19094610
Alignment:
Q  42 cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||| |||||| ||| ||||||| |||| || |||||||| || ||||||||| |||| ||| | |||||||    
T  19094531 cttgcacaattttgggcagtaccaaaaaacgttttaaggagagcgacctgat-cgtgactcaacctaataacaacttcggt 19094610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 40847614 - 40847670
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaaga 81  Q
    ||||||||||||| ||| |||||||| |||   ||||||||||||||||||||||||    
T  40847614 cgtggttgatagtttgccttgcacaactttgaacagtgccacaaaacgtcttaaaga 40847670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 36724786 - 36724650
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||||||||| |||||||||||||||||| || ||||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||| |||||||||    
T  36724786 gtcgtggttgattgtctgcttgcacaattttgggtagtgccataaaacgtcttaaagagagcgacctagtccatgactcagcctagtaatctcttcggtg 36724687  T
Q  124 acaaaaatgattttttaactaattttgactattgttc 160  Q
    ||||||||  |||||||||||||||||||||||||||    
T  36724686 acaaaaatatttttttaactaattttgactattgttc 36724650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 12906232 - 12906091
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| | || |||| ||||||||||| ||||||||     
T  12906232 gtcgtggttgatagtctgcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctagttcgcgactaagcctagtaatctcttcggta 12906133  T
Q  124 acaaaaatgattttttaactaa-ttttgactattgttccaaca 165  Q
    |||||||| ||||||||||||| ||||||||||||||||||||    
T  12906132 acaaaaat-attttttaactaatttttgactattgttccaaca 12906091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 27761843 - 27761996
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagt 110  Q
    |||| |||| || ||||||||||||||||||||||||||||||| | ||||||||| |||||| ||||||| || |||||| || | |||||| ||||||    
T  27761843 ttatcctggggacgtcgtggttgatagtctgcttgcacaattttggacagtgccacgaaacgttttaaagagagtgacctagtctgcgactcaacctagt 27761942  T
Q  111 aatatcttcggtgacaaaaatgattttttaactaattttgactattgttccaaca 165  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||||||||||||    
T  27761943 aatatcttcaatgacaaaaat-attttttaactaatgttgactattgttccaaca 27761996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 31064034 - 31063892
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    ||||||||||||||| |||||| |||||||| |  |||||||| |||| ||||||||| ||||||||| |||  |||||||||||||||| |||||||||    
T  31064034 gtcgtggttgatagtttgcttgaacaattttggaaagtgccacgaaacctcttaaagagagcgacctagtccacgactcagcctagtaatctcttcggtg 31063935  T
Q  124 acaaaaatgattttttaactaattttgactattgttccaacat 166  Q
    |||| ||  ||||||||||||||||||||||||||||||||||    
T  31063934 acaagaaatattttttaactaattttgactattgttccaacat 31063892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 32987311 - 32987185
Alignment:
Q  31 ttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaaaaa 130  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||| |||| |||||||| ||||||| |||||| |||||||||    
T  32987311 ttgatagtctgcttgcacaattttaggcagtgccacaaaacatcttaaagagagtgacctagtccgcgactcagcttagtaatctcttcgatgacaaaaa 32987212  T
Q  131 tgattttttaactaattttgactattgt 158  Q
      | ||||||||||||||||||||||||    
T  32987211 cta-tttttaactaattttgactattgt 32987185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 33380938 - 33381081
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||||||||||||||||||||||||||||  |||||| ||| |||||||||||||| ||||||||| | |  |||||||||||||||| | ||| |||    
T  33380938 gtcgtggttgatagtctgcttgcacaattttgagcagtgtcacgaaacgtcttaaagagagcgacctagtacacgactcagcctagtaatcttttctgtg 33381037  T
Q  124 acaaaaatgat-tttttaactaattttgactattgttccaacat 166  Q
    | |||||  || ||||||||||||||||||||||||||||||||    
T  33381038 ataaaaaaaatatttttaactaattttgactattgttccaacat 33381081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 24159803 - 24159954
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagt 110  Q
    |||| |||| || ||||| ||||||||||||||||||||||||| ||||||   || |||||||||||||| ||||||||| |||| |||||||||||||    
T  24159803 ttatcctggggacgtcgtcgttgatagtctgcttgcacaattttgggcagtattacgaaacgtcttaaagagagcgacctagtccgcgactcagcctagt 24159902  T
Q  111 aatatcttcggtgacaaaaatgattttttaactaattttgactattgttccaa 163  Q
    ||| |||||||||| | |||  | |||||||||||||||||||||| ||||||    
T  24159903 aatctcttcggtgatagaaaata-tttttaactaattttgactattattccaa 24159954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 23193240 - 23193382
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||||||||||||||||||||| |||||| ||  ||||||  |||||||||| ||| ||||||||| |||| |||||||| ||||||| |||||| ||    
T  23193240 gtcgtggttgatagtctgcttgcataattttgggttgtgccatgaaacgtcttatagagagcgacctagtccgcgactcagcgtagtaatctcttcgatg 23193339  T
Q  124 acaaaaatgattttttaactaattttgactattgttccaacat 166  Q
    ||| |||    ||||||||||||||||||||||||||||||||    
T  23193340 acagaaaaatatttttaactaattttgactattgttccaacat 23193382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 2493837 - 2493976
Alignment:
Q  26 cgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgac 125  Q
    ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||| |  | |||||| ||||||||| ||||||||  |    
T  2493837 cgtggttgatagtttgcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctagtttgcgactcaacctagtaatctcttcggttgc 2493936  T
Q  126 aaaaatgattttttaactaattttgactattgttccaaca 165  Q
    | | |    ||||||||||||||||| |||||||||||||    
T  2493937 agataaatatttttaactaattttgattattgttccaaca 2493976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 47451244 - 47451341
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||||||||||||| ||||||||||||||||||||||||  |||||||||||||| ||||||||  | ||||||||| ||||||||||  |||||||    
T  47451244 cgtggttgatagtctgtcttgcacaatttttggcagtgccatgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaataatttcggtg 47451341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 23192836 - 23192932
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  23192836 cgtggttgatagtctgccttgtacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 23192932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 26927741 - 26927837
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||| |||||| || | ||||||||| |||||||| | |||||||    
T  26927741 cgtggttgatagtctgccttgcacaattttgggcaatgccacgaaacgtcttaaagagagcgacttagt-cgtgactcaacctagtaacaacttcggt 26927837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 3094187 - 3094094
Alignment:
Q  29 ggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  3094187 ggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 3094094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 18784553 - 18784653
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctag 109  Q
    |||||||||||  | ||||||||||||||||| |||||||||||| ||||||||||| ||| |||||||| | |||||||| || ||||||||| |||||    
T  18784553 ttattctggaggcggcgtggttgatagtctgccttgcacaattttaggcagtgccacgaaatgtcttaaa-agagcgacctgat-cgtgactcaacctag 18784650  T
Q  110 taa 112  Q
    |||    
T  18784651 taa 18784653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 10135532 - 10135436
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||| |||||| |||||||||||| || |||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  10135532 cgtggttgattgtctgccttgcacaattttaggtagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 10135436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 25661844 - 25661897
Alignment:
Q  28 tggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaaga 81  Q
    ||||||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  25661844 tggttgatagtctacttgcacaattttgggtagtgccacaaaacgtcttaaaga 25661897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 33301199 - 33301264
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| | ||||||    
T  33301199 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagaacgacct 33301264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 12260072 - 12260009
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgac 88  Q
    |||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||| ||||||    
T  12260072 cgtggttgatagtctgtcttgcacaattttgggcagtgtcacgaaacgtcttaaagagagcgac 12260009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 19799032 - 19799118
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||||||||||||||| ||||||||||||| |  |||||||| |||||||||||||| ||||| || || ||||||||| ||||||||    
T  19799032 cgtggttgatagtctgtcttgcacaattttggatagtgccacgaaacgtcttaaagagagcgatctgat-cgtgactcaacctagtaa 19799118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 25855229 - 25855151
Alignment:
Q  43 ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  25855229 ttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 25855151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 39588386 - 39588472
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||||| ||||||||| ||||||||||||| | ||||||||| |||||||||||||| |||||||| || ||||||| | ||||||||    
T  39588386 cgtggtagatagtctgtcttgcacaattttggacagtgccacgaaacgtcttaaagagagcgacctgat-cgtgacttaacctagtaa 39588472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 10140165 - 10140069
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||| |||||| ||||||||||||  | |||||||| |||||| ||||||| |||||||| || ||||||||| |||||||| | |||||||    
T  10140165 cgtggttgattgtctgccttgcacaattttgagtagtgccacgaaacgtgttaaagagagcgacctgat-cgtgactcaacctagtaacaacttcggt 10140069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 40166052 - 40165960
Alignment:
Q  30 gttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||| |||||||| |||||||||||| ||||||||||| |||||||||||||| |||||| |  | ||||||||| |||||||| | |||||||    
T  40166052 gttgttagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacatggt-cgtgactcaacctagtaacaacttcggt 40165960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 47455405 - 47455502
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    ||||||||||| |||| ||||||||||||| | || |||||| |||||||||||||| ||||||||  | ||||||||| |||| ||| | ||||||||    
T  47455405 cgtggttgataatctgtcttgcacaattttggacattgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctaataacaacttcggtg 47455502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 16649632 - 16649696
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||  ||||||||||||| | ||||||||| |||||||||||||| ||||||||    
T  16649632 cgtggttgatagtctatcttgcacaattttggacagtgccac-aaacgtcttaaagagagcgacct 16649696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 28858067 - 28858110
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgcttgcacaatttt 54  Q
    |||| |||| || |||||||||||||||||||||||||||||||    
T  28858067 ttatcctggggacgtcgtggttgatagtctgcttgcacaatttt 28858110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 165
Target Start/End: Original strand, 28858159 - 28858189
Alignment:
Q  135 tttttaactaattttgactattgttccaaca 165  Q
    |||||||||||||||||||||||||||||||    
T  28858159 tttttaactaattttgactattgttccaaca 28858189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 51041482 - 51041535
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaa 79  Q
    ||||||||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  51041482 cgtggttgatagtctgccttgcacaatttg-ggcagtgccacgaaacgtcttaaa 51041535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 2290885 - 2290788
Alignment:
Q  27 gtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtga 124  Q
    ||||||||||||||||||| | |||||| |  |||   |||||| ||||||| |||| || |||||| || |||||| | ||||||||||||| ||||    
T  2290885 gtggttgatagtctgcttgaataattttagatagtattacaaaatgtcttaacgaaaacggcctaatacgcgactcaacatagtaatatcttcagtga 2290788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 48432486 - 48432346
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |||||||||    
T  48432486 gtcgtggttgatagtctgttttcacaattttgggcagtgccacaaaacgtcttaaagagagcgacctagtccgcgactcagcctagtaatctcttcggtg 48432387  T
Q  124 acaaaaatgattttttaactaattttgactattgttccaaca 165  Q
    ||| ||| |  ||||||||||||||||||||||||| |||||    
T  48432386 acagaaa-gtatttttaactaattttgactattgttgcaaca 48432346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 48435832 - 48435983
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagt 110  Q
    |||| |||| || ||||||||||||||||||||||||| |||||   ||||| ||| |||||||||||||| ||||||||| |||| |||||||||||||    
T  48435832 ttatcctggggacgtcgtggttgatagtctgcttgcactattttgaacagtgtcacgaaacgtcttaaagagagcgacctagtccgcgactcagcctagt 48435931  T
Q  111 aatatcttcggtgacaaaaatgattttttaactaattttgactattgttccaa 163  Q
    ||| |||||||||||  |||  | ||||||||||||||||| |||||||||||    
T  48435932 aatctcttcggtgacggaaaata-tttttaactaattttgagtattgttccaa 48435983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 4662275 - 4662120
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagt 110  Q
    |||| |||| || ||| |||||||||||||||||||| |||||| |||| | |||| |||||||||| ||| ||||||||| |||  |||||||| | ||    
T  4662275 ttatcctggggacgtcatggttgatagtctgcttgcataattttgggcatttccactaaacgtcttagagagagcgacctagtccacgactcagcgtggt 4662176  T
Q  111 aatatcttcggtgacaaaaatgat-tttttaactaattttgactattgttccaaca 165  Q
    ||| ||||||||||||||||  || |||||||||||||||||||||| ||||||||    
T  4662175 aatctcttcggtgacaaaaaaaatatttttaactaattttgactattattccaaca 4662120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 16983071 - 16982930
Alignment:
Q  25 tcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtga 124  Q
    |||||||||||| ||| ||| ||||||||| | ||||| ||  |||||||||||| | ||||||||| |||| || |||||||| |||||||||||||||    
T  16983071 tcgtggttgatattcttctttcacaattttggacagtgtcatgaaacgtcttaaaaagagcgacctagtccgcgaatcagcctactaatatcttcggtga 16982972  T
Q  125 caaaaat-gattttttaactaattttgactattgttccaaca 165  Q
    ||||| |   ||||||||||||||||||||||||||||||||    
T  16982971 caaaattattttttttaactaattttgactattgttccaaca 16982930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 23666142 - 23666238
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  23666142 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 23666238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 24038390 - 24038486
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  24038390 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 24038486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 39775747 - 39775832
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagta 111  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||    
T  39775747 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagta 39775832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 3419069 - 3418973
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| |||||| |  | ||||||||| |||||||| | |||||||    
T  3419069 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacttggt-cgtgactcaacctagtaacaacttcggt 3418973  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 3672660 - 3672564
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  3672660 cgtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 3672564  T

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Target: chr3; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 3692692 - 3692596
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  3692692 cgtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 3692596  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 7571237 - 7571333
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||| ||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  7571237 cgtgattgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 7571333  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 8883244 - 8883179
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  8883244 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacct 8883179  T

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Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 12965892 - 12965957
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  12965892 cgtggttgatagtctgtcttgcacaattttgggcagtgccataaaacgtcttaaagagagcgacct 12965957  T

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Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 18467299 - 18467203
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  18467299 cgtggttaatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 18467203  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 3033717 - 3033622
Alignment:
Q  27 gtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  3033717 gtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 3033622  T

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Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 28243530 - 28243665
Alignment:
Q  28 tggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaa 127  Q
    ||||||||||||||||||| ||||||| | |||||||| ||||||||||||| |||| || ||| || | ||||||  ||| |||  || |  || ||||    
T  28243530 tggttgatagtctgcttgcgcaattttcgacagtgccataaaacgtcttaaaaaaagtgatctagtcggcgactcaatctaataaactcgtatgtaacaa 28243629  T
Q  128 aaatgattttttaactaattttgactattgttccaac 164  Q
    |||| | ||||||||||||||||||| ||||||||||    
T  28243630 aaatta-tttttaactaattttgacttttgttccaac 28243665  T

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Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 758387 - 758483
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| || |||||||| |||||||||||||| ||||| ||  | ||||||||| |||||||| | |||||||    
T  758387 cgtggttgatagtctgccttgcacaattttgggtagtgccacgaaacgtcttaaagagagcgatctggt-cgtgactcaacctagtaacaacttcggt 758483  T

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Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 8888004 - 8887908
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||| |||| ||||||||||||| | |||||| ||||||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  8888004 cgtggttgataatctgtcttgcacaattttggacagtgcaacaaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 8887908  T

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Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 12112661 - 12112756
Alignment:
Q  27 gtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||| ||||||||| ||| | ||||||||| |||||||||||||| ||||||||| | ||||| ||| |||||||| | |||||||    
T  12112661 gtggttgatagtctgtcttgcacaactttggacagtgccacgaaacgtcttaaagagagcgacctagt-cgtgattcaacctagtaacaacttcggt 12112756  T

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Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 122
Target Start/End: Complemental strand, 29350297 - 29350218
Alignment:
Q  42 cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||| |  | ||||||||| |||||||| | |||||||    
T  29350297 cttgcacaattttgggcagtgccacgaaacgtcttaaagaaagcgacatggt-cgtgactcaacctagtaacaacttcggt 29350218  T

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Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 3657261 - 3657355
Alignment:
Q  28 tggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||| |||||||||||||   ||||||||| |||||||||||||| ||||| ||||| ||||||||| | |||||| | |||||||    
T  3657261 tggttgatagtctgtcttgcacaattttgaacagtgccacgaaacgtcttaaagagagcgatctaat-cgtgactcaacatagtaacaacttcggt 3657355  T

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Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 32474684 - 32474751
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtctta 77  Q
    |||| ||||||| | |||||||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  32474684 ttatcctggagacggcgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtctta 32474751  T

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Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 55431389 - 55431307
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagccta 108  Q
    ||||||||||||||||| ||||| |||||||| ||||| ||| |||||||||||||| |||||||| || ||||||||| ||||    
T  55431389 cgtggttgatagtctgccttgcataatttttgacagtgtcacgaaacgtcttaaagagagcgacctgat-cgtgactcaaccta 55431307  T

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Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 21100137 - 21100036
Alignment:
Q  28 tggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaa 127  Q
    ||||| |||||||| ||||||||||||||||| |  ||  ||| |||||||| | |||||| ||||||| |||||||||||||| | ||||||||||| |    
T  21100137 tggttaatagtctgtttgcacaatttttggcattttcatgaaaagtcttaaa-atagcgacataatccgcgactcagcctagtagtctcttcggtgacca 21100039  T
Q  128 aaa 130  Q
    |||    
T  21100038 aaa 21100036  T

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Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 8069753 - 8069658
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||||||||||||  | ||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  8069753 cgtggttgatagtctgtcttgcacaatttg-gacagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 8069658  T

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Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 14438714 - 14438810
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||| |||||| |||||||||||| || |||||||| ||||||||||||||  |||||||  | ||||||||| |||||||| | |||||||    
T  14438714 cgtggttgattgtctgccttgcacaattttgggtagtgccacgaaacgtcttaaagagggcgacctggt-cgtgactcaacctagtaacaacttcggt 14438810  T

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Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 20520128 - 20520042
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||||| | ||||||||| || ||||||||||| |||||||||||||| || |||||  | ||||||||| ||||||||    
T  20520128 cgtggttgatagtctcccttgcacaatcttgggcagtgccacgaaacgtcttaaagagagtgacctggt-cgtgactcaacctagtaa 20520042  T

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Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 18472081 - 18471986
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| |||||||||||  ||| || |||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  18472081 cgtggttgatagtctgccttgcacaattttaggcagtgccac-gaacatcgtaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 18471986  T

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Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 49971443 - 49971539
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||| |||||||||||| |||||||||||| |  |||||||| |||||||||||||| | ||||||  | ||||||||| |||||||| | |||||||    
T  49971443 cgtgattgatagtctgccttgcacaattttggatagtgccacgaaacgtcttaaagagatcgacctggt-cgtgactcaacctagtaacaacttcggt 49971539  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 1641092 - 1641147
Alignment:
Q  27 gtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaaga 81  Q
    ||||||||||||||| |||  |||||||||||||||| | ||||||||||||||||    
T  1641092 gtggttgatagtctgtcttttacaatttttggcagtgtcgcaaaacgtcttaaaga 1641147  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 19276939 - 19276993
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaa 79  Q
    |||||||||||||||| ||| ||||||||| | ||||||||||||| ||||||||    
T  19276939 cgtggttgatagtctgtcttacacaattttcgacagtgccacaaaaagtcttaaa 19276993  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 25726815 - 25726877
Alignment:
Q  28 tggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||| ||| |||||||||| | || |||||| | |||||||||||||| ||||||||    
T  25726815 tggttgatagcctgattgcacaattctgggtagtgccgcgaaacgtcttaaagagagcgacct 25726877  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 12971652 - 12971717
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||| |||||| |||| ||||||||||||| |||| |||||| |||||||||||||| || |||||    
T  12971652 cgtgattgataatctgtcttgcacaattttgggcaatgccacgaaacgtcttaaagagagagacct 12971717  T

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Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 23661483 - 23661524
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccac 66  Q
    ||||||||||||||||| |||||||||||| |||||||||||    
T  23661483 cgtggttgatagtctgccttgcacaattttgggcagtgccac 23661524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 27708928 - 27708856
Alignment:
Q  49 aatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||| ||||||||||| |||||||||||||| | ||||||  | ||||||||| |||||||| | |||||||    
T  27708928 aattttgggcagtgccacgaaacgtcttaaagagaacgacctggt-cgtgactcaacctagtaacaacttcggt 27708856  T

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Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 18265522 - 18265664
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||| ||||  ||||||||||||||| |||||||||    
T  18265522 gtcgtggttgatagtctgattgcacaattttaggcagtgtcacaaaacgtcttaaagagagcgacctagtccgctactcagcctagtaatctcttcggtg 18265621  T
Q  124 acaaaaatgat-tttttaactaattttgactattgttccaaca 165  Q
    ||| |||  ||  ||||||||||||||||||||||||||||||    
T  18265622 acagaaaaaatacttttaactaattttgactattgttccaaca 18265664  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 165
Target Start/End: Original strand, 1286276 - 1286422
Alignment:
Q  17 tggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatc 116  Q
    |||||| ||||||||| ||| |||  |||||||||||| |||| |||||||||  |||||||||| |||| | || |||| |||||||||||||||| ||    
T  1286276 tggagacgtcgtggttaataatctagttgcacaattttcggcaatgccacaaat-gtcttaaagagagcggcatagtccgcgactcagcctagtaatctc 1286374  T
Q  117 ttcggtgacaaaaatgattttttaactaattttgactattgttccaaca 165  Q
    | |||||||| |||  | |||||||||||||||||| ||||||||||||    
T  1286375 tccggtgacagaaaata-tttttaactaattttgacaattgttccaaca 1286422  T

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Target: chr5; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 556771 - 556675
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  556771 cgtggttgatagtctgccttgcacaattttgggcagtgccacaaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 556675  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 561543 - 561447
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  561543 cgtggttgatagtctgccttgcacaattttgggcagtgccacaaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 561447  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 3666008 - 3665912
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||||||||| |||| ||||||||| | ||||||||| |||||||| | |||||||    
T  3666008 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttgaagagagcgacctagt-cgtgactcaacctagtaacaacttcggt 3665912  T

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Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 26667348 - 26667252
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  26667348 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 26667252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 26938945 - 26938849
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  26938945 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 26938849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 29167992 - 29168088
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  29167992 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 29168088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 32461568 - 32461633
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  32461568 cgtggttgatagtctgtcttgcacaattttgggcagtgccacaaaacgtcttaaagagagcgacct 32461633  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 35679894 - 35679989
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||   || ||||||| |||||||| | |||||||    
T  35679894 cgtggttgatagtctgccttgcacaatttttgacagtgccacgaaacgtcttaaagagagcgacct--gccatgactcaacctagtaacagcttcggt 35679989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 7451834 - 7451738
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| | ||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  7451834 cgtggttgatagtctgccttgcacaattttggacagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 7451738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 10759839 - 10759934
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||| | ||||||||  | ||||||||| |||||||| | |||||||    
T  10759839 cgtggttgatagtctgccttgcacaattttgggcagtgccacaaaacgtcttaaa-agagcgacctggt-cgtgactcaacctagtaacaacttcggt 10759934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 11981284 - 11981362
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||  | ||||||||||  |||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11981284 ttattctggaggcggcgtggttgat--tctgtcttgcacaattttgggcagtgccacaaaacgtcttaaagaaagcgacct 11981362  T

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Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 12103101 - 12103036
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  12103101 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacct 12103036  T

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Target: chr5; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 25215247 - 25215381
Alignment:
Q  28 tggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaa 127  Q
    ||||||||||| | ||||||||||||| |||| || || |||| |||||||||| ||||||||| || | ||||||||| | |||| ||||||||||| |    
T  25215247 tggttgatagtatacttgcacaattttaggcaatgtcataaaatgtcttaaagagagcgacctagtctgcgactcagccaaataatctcttcggtgacca 25215346  T
Q  128 aaatgattttttaactaa-ttttgactattgttccaa 163  Q
    | |  | ||||||||||| |||| |||||||||||||    
T  25215347 aca--actttttaactaactttttactattgttccaa 25215381  T

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Target: chr5; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 25279398 - 25279532
Alignment:
Q  28 tggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaa 127  Q
    ||||||||||| | ||||||||||||| |||| || || |||| |||||||||| ||||||||| || | ||||||||| | |||| ||||||||||| |    
T  25279398 tggttgatagtatacttgcacaattttaggcaatgtcataaaatgtcttaaagagagcgacctagtctgcgactcagccaaataatctcttcggtgacca 25279497  T
Q  128 aaatgattttttaactaa-ttttgactattgttccaa 163  Q
    | |  | ||||||||||| |||| |||||||||||||    
T  25279498 aca--actttttaactaactttttactattgttccaa 25279532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 36942284 - 36942380
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  36942284 cgtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 36942380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 42001510 - 42001414
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  42001510 cgtggttgatagtctgtcttacacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 42001414  T

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Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 12102851 - 12102946
Alignment:
Q  27 gtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||| | |||||||||||| | ||||||||||||| |||||||||| ||||||||| | ||||||||| |||||||| | |||||||    
T  12102851 gtggttgatagtcttccttgcacaattttggccagtgccacaaaaagtcttaaagagagcgacctagt-cgtgactcaacctagtaacaacttcggt 12102946  T

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Target: chr5; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 36423728 - 36423648
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||  | ||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||| ||||||||    
T  36423728 ttattctggaggcggcgtggttgatagtctgccttgcacaattttgggcagtgccgcgaaacgtcttaaagagagcgacct 36423648  T

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Target: chr5; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 36428785 - 36428699
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||||||| |||||||||||| |||||| || |||||||||||||||| ||||||||  | ||||||||| ||||||||    
T  36428785 cgtggttgatagtctgccttgcacaattttgggcagttccgcaaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 36428699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 39523125 - 39523039
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||||||||||||||| ||||||||||||| ||| ||||||| |||||||||||||| ||||||||  | ||||||||| ||||||||    
T  39523125 cgtggttgatagtctgtcttgcacaattttgggcggtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 39523039  T

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Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 12045158 - 12045254
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||||  |||||||  | ||||||||| |||||||| | |||||||    
T  12045158 cgtggtcgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagggcgacctggt-cgtgactcaacctagtaacaacttcggt 12045254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 12501918 - 12501983
Alignment:
Q  26 cgtggttgatagtctgctt-gcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||| || |||||||||| ||||||||||| |||||||||||||| ||||||||    
T  12501918 cgtggttgatagtctgttttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacct 12501983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 36937530 - 36937595
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||    
T  36937530 cgtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcgacct 36937595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 37248814 - 37248910
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| || |||||||| ||| |||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  37248814 cgtggttgatagtctgccttgcacaattttaggtagtgccacgaaatgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 37248910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 40147971 - 40147906
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  40147971 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacatcttaaagagagcgacct 40147906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 41996741 - 41996645
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||||| ||| ||||  | ||||||||| |||||||| | |||||||    
T  41996741 cgtggttgatagtctgtcttacacaattttgggcagtgccacgaaacgtcttaaagagagcaacctggt-cgtgactcaacctagtaacaacttcggt 41996645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 37652834 - 37652945
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctag 109  Q
    |||| |||||| || ||||||||||||||||| |||||||||||| | || || ||| |||||||||||||| |||||||| || ||||||||| ||||     
T  37652834 ttatcctggaggtggcgtggttgatagtctgccttgcacaattttggacaatgtcacgaaacgtcttaaagagagcgacctgat-cgtgactcaacctaa 37652932  T
Q  110 taatatcttcggt 122  Q
    ||| | |||||||    
T  37652933 taacaacttcggt 37652945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 39518486 - 39518400
Alignment:
Q  26 cgtggttgatagtctgct-tgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||||||||||||||||  ||||||||||| ||| ||||||| |||||||||||||| ||||||||  | ||||||||| ||||||||    
T  39518486 cgtggttgatagtctgccatgcacaattttgggcggtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 39518400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 6155439 - 6155524
Alignment:
Q  27 gtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||||| |||| | |||||| | ||||||||| |||||||||||||| |||||||| || ||||||||| ||||||||    
T  6155439 gtggttgatagtctgtcttgtaaaattttggacagtgccacgaaacgtcttaaagagagcgacctgat-cgtgactcaacctagtaa 6155524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 6514620 - 6514676
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaaga 81  Q
    ||||||||||||||||| ||||| |||||| ||||||||||| ||||||||||||||    
T  6514620 cgtggttgatagtctgccttgcaaaattttgggcagtgccacgaaacgtcttaaaga 6514676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 12041951 - 12042016
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||| ||| ||||| | |||| ||||||||||| |||||||||||||| | ||||||    
T  12041951 cgtggttgatagtttgccttgcatatttttgggcagtgccacgaaacgtcttaaagagaacgacct 12042016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 15414900 - 15414961
Alignment:
Q  26 cgtggttgatagtctgcttg-cacaatttttggcagtgccacaaaacgtcttaaagaaagcg 86  Q
    ||||||||||| ||||| |  ||||||||| ||||||||||||||||| |||||||| ||||    
T  15414900 cgtggttgatattctgcctcacacaattttgggcagtgccacaaaacgacttaaagagagcg 15414961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 41587179 - 41587244
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||| |||||||||||||   ||||| ||| |||||||||||||| ||| ||||    
T  41587179 cgtggttgatagtctgtcttgcacaattttgaacagtgtcacgaaacgtcttaaagagagcaacct 41587244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 16595938 - 16596094
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagt 110  Q
    |||| |||| || ||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||| ||||||||||| |    
T  16595938 ttatcctggggacgtcgtggttgacagtctgcttgcacaattttggacagtgccacaaaacgtcttaaagagagcgacctaatccgcgactcagcctaat 16596037  T
Q  111 aatatcttcggtgacaaaaatgatt--ttttaactaattttgactattgttccaaca 165  Q
    ||| ||||| ||||||||||  | |  ||||||| ||||||||||||||||||||||    
T  16596038 aatctcttcagtgacaaaaaaaaatatttttaaccaattttgactattgttccaaca 16596094  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 33722924 - 33723077
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagt 110  Q
    |||| |||| || |||||||| ||| |||||||||||||||||| | ||||| ||| |||||||||||||| || |||||| |||| |||||||||||||    
T  33722924 ttatcctggggacgtcgtggtcgatggtctgcttgcacaattttggacagtgtcacgaaacgtcttaaagagagtgacctagtccgcgactcagcctagt 33723023  T
Q  111 aatatcttcggtgacaaaaatgattttttaactaattttgactattgttccaaca 165  Q
    ||| |||||||||||| |||  | |||||||||||||||||||||||||||||||    
T  33723024 aatctcttcggtgacagaaaata-tttttaactaattttgactattgttccaaca 33723077  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 15020483 - 15020625
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||||||||||||||| |||||||||||| || |||| ||| |||||| ||||||| ||| ||||| || | || |||||||||||   |||||||||    
T  15020483 gtcgtggttgatagtctgtttgcacaattttgggaagtgtcacgaaacgttttaaagagagcaacctagtctgcgattcagcctagtagactcttcggtg 15020582  T
Q  124 aca-aaaatgattttttaactaattttgactattgttccaaca 165  Q
    ||| | |||  ||||||||||||||||||||||||||||||||    
T  15020583 acatacaatatttttttaactaattttgactattgttccaaca 15020625  T

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Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 20513184 - 20513055
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||||||||||||||||||||||||||||  |||||||||| |||| ||||||||| ||||||||| |||  |||||||||||||||| |||||  ||    
T  20513184 gtcgtggttgatagtctgcttgcacaattttgagcagtgccacgaaacatcttaaagagagcgacctagtccacgactcagcctagtaatctcttcaatg 20513085  T
Q  124 acaaaaatgattttttaactaattttgact 153  Q
    ||| |||    ||||||||||||| |||||    
T  20513084 acagaaaaatatttttaactaattctgact 20513055  T

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Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 40684848 - 40684993
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||| |||||||||||||||||| ||||| | |||| || |||||||||||||| | |||| |||||||||  ||||| ||||||||| |||||  ||    
T  40684848 gtcgtgattgatagtctgcttgcacgattttagacagtaccgcaaaacgtcttaaaaagagcggcctaatccgcaactcaacctagtaatttcttccatg 40684947  T
Q  124 acaaaaatgattttttaactaattttgactattgttccaacattat 169  Q
    ||| |||    ||||||||||||||| |||||||||||| ||||||    
T  40684948 acagaaaaatatttttaactaattttaactattgttccatcattat 40684993  T

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Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 2575273 - 2575379
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    ||||||||||||| |||||||||| |||||| |||||||| ||||||||| ||||||| | ||||||||| ||| ||||| ||||||||| | |||| ||    
T  2575273 gtcgtggttgatattctgcttgcataattttaggcagtgctacaaaacgtattaaagagaacgacctaattcgtaactcaacctagtaattttttcgatg 2575372  T
Q  124 acaaaaa 130  Q
    |||||||    
T  2575373 acaaaaa 2575379  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 5271438 - 5271534
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  5271438 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 5271534  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 13522011 - 13522107
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  13522011 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 13522107  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 31269110 - 31269014
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  31269110 cgtggttgatagtctgccttgcacaattttaggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 31269014  T

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Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 31273597 - 31273501
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  31273597 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 31273501  T

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Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 42758759 - 42758879
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctag 109  Q
    |||||||||||  | |||||||||||||||| ||||||||||||| ||||||||||| |||| ||||||||| ||||||||  | ||||||||| |||||    
T  42758759 ttattctggaggcgacgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacatcttaaagagagcgacctggt-cgtgactcaacctag 42758857  T
Q  110 taatatcttcggtgacaaaaat 131  Q
    ||| | ||||| ||| ||||||    
T  42758858 taacaacttcgatgaaaaaaat 42758879  T

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Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 37259896 - 37259992
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| ||||||||||||  | |||||||| |||||||||||||||||||||||  | ||||||||| |||||||| | |||||||    
T  37259896 cgtggttgatagtctgccttgcacaattttgagtagtgccacgaaacgtcttaaagaaagcgacctggt-cgtgactcaacctagtaacaacttcggt 37259992  T

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Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 55081724 - 55081854
Alignment:
Q  28 tggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaa 127  Q
    |||||||||||||||||| ||||||||  ||||||| |||||||||         |||||||||||||| ||||||||||  |||| |||||| |||||     
T  55081724 tggttgatagtctgcttgtacaattttgagcagtgctacaaaacgtg--------agcgacctaatccgcgactcagcctgataatctcttcgatgacag 55081815  T
Q  128 aaatgat-tttttaactaattttgactattgttccaaca 165  Q
     ||  || |||||||||||||||||||||||||||||||    
T  55081816 gaaaaatatttttaactaattttgactattgttccaaca 55081854  T

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Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 33468983 - 33469078
Alignment:
Q  17 tggagatgtcgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||| || ||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||| | ||||||| | ||||||||| ||||||||    
T  33468983 tggaggtggcgtggttgacagtctgccttgcacaactttgggcagtgccacaaaacgtcttaaagagaacgacctagt-cgtgactcaacctagtaa 33469078  T

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Target: chr4; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 37264583 - 37264669
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| ||||||||    
T  37264583 cgtggttgatagtctgccttgcataattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 37264669  T

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Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 8030499 - 8030560
Alignment:
Q  30 gttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  8030499 gttgatagtctatcttgcacaattttgggcagtgccacaaaacgtcttaaagagagcgacct 8030560  T

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Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 16421105 - 16421009
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||| ||||||| || ||||||||  | ||||||||| |||||||| | |||||||    
T  16421105 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaatgtcttaatgagagcgacctggt-cgtgactcaacctagtaacaacttcggt 16421009  T

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Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 31765962 - 31765897
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| || |||||    
T  31765962 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagtgacct 31765897  T

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Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 13059485 - 13059390
Alignment:
Q  27 gtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||| |||||||||||||  |||||||||| |||||||||||||| ||||| ||  | | ||||||| |||||||||| |||||||    
T  13059485 gtggttgatagtctgtcttgcacaattttatgcagtgccacgaaacgtcttaaagagagcgatctggt-catgactcaacctagtaataacttcggt 13059390  T

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Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 12878330 - 12878229
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctag 109  Q
    ||||||||||| || |||| |||||||||||| ||||||||||||    |||| ||| |||||||||||||| |||||||| || ||||||||| |||||    
T  12878330 ttattctggaggtggcgtgattgatagtctgctttgcacaattttgaaaagtgtcacgaaacgtcttaaagagagcgacctgat-cgtgactcaacctag 12878232  T
Q  110 taa 112  Q
    |||    
T  12878231 taa 12878229  T

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Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 55251810 - 55251710
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctag 109  Q
    |||| |||||| || |||||||||||||||| ||||||||||||| | ||||||||| |||||||||||| | ||||||||  | ||||||||| |||||    
T  55251810 ttatcctggaggtggcgtggttgatagtctgtcttgcacaattttggacagtgccacgaaacgtcttaaa-agagcgacctggt-cgtgactcaacctag 55251713  T
Q  110 taa 112  Q
    |||    
T  55251712 taa 55251710  T

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Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 12823914 - 12823979
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||| || ||||||||||||| ||||||||||| ||| |||||||||| ||||||||    
T  12823914 cgtggttgatagtttgtcttgcacaattttgggcagtgccacgaaatgtcttaaagagagcgacct 12823979  T

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Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 19106710 - 19106633
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcga 87  Q
    |||||||||||  | |||||||||||||| || |||||||||||| |||||||| |  ||||||||||||||||||||    
T  19106710 ttattctggaggcgacgtggttgatagtcagccttgcacaattttgggcagtgctatgaaacgtcttaaagaaagcga 19106633  T

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Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 39991894 - 39992027
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaattttt-ggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||| ||| |||||||| ||||||||||||| || ||||| ||||||  ||||||||| | | || ||||  | |||||| ||||||||| |||| |||    
T  39991894 gtcgtagtttatagtctgattgcacaatttttgggtagtgctacaaaatatcttaaagagaacaacttaatatgcgactcaacctagtaatctctttggt 39991993  T
Q  123 gacaaaaatgattttttaactaattttgactatt 156  Q
    ||| ||||  |||||| |||||||||| ||||||    
T  39991994 gaccaaaaatatttttgaactaattttaactatt 39992027  T

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Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 5928239 - 5928303
Alignment:
Q  27 gtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||| ||||||||||||  |||||||||| |||| ||||||||| ||||||||    
T  5928239 gtggttgatagtctgccttgcacaattttgagcagtgccactaaacatcttaaagagagcgacct 5928303  T

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Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 8693787 - 8693701
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||| || ||||||||||||| || || ||||| |||||||||||||| ||||||||  | ||||||||| ||||||||    
T  8693787 cgtggttgatagtatgtcttgcacaattttgggtagcgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 8693701  T

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Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 13065787 - 13065883
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||| | || ||||| ||| ||||||||||  |||||||||||||| |||||| || | ||||||||| |||||||| | |||||||    
T  13065787 cgtggttgatagtctccctttcacaactttgggcagtgccatgaaacgtcttaaagagagcgacatagt-cgtgactcaacctagtaacaacttcggt 13065883  T

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Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 19906323 - 19906231
Alignment:
Q  30 gttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||| ||||||||||||| | ||||| |||  ||||||||||| | |||||||| || ||||||||| |||| ||||| |||||||    
T  19906323 gttgatagtctgtcttgcacaattttagacagtgtcactgaacgtcttaaaaagagcgacctgat-cgtgactcaacctaataataacttcggt 19906231  T

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Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 31729406 - 31729471
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||| ||||| |||||| |||||||||||| || |||||||| |||||||||||||| ||||||||    
T  31729406 cgtgattgattgtctgccttgcacaattttgggtagtgccacgaaacgtcttaaagagagcgacct 31729471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 51697072 - 51696992
Alignment:
Q  32 tgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||| |||||||||||| ||||||||||  ||||||||||| || ||||||||  | ||||||||| ||||||||    
T  51697072 tgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaggagagcgacctggt-cgtgactcaacctagtaa 51696992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 33463392 - 33463461
Alignment:
Q  42 cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||| ||| | ||||||||| |||||||||||||| ||||||||  | ||||||||| ||||||||    
T  33463392 cttgcacaactttggacagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 33463461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 16953160 - 16953107
Alignment:
Q  27 gtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaa 79  Q
    |||||||||||||||| |||||||||||| || ||| |||| ||||||||||||    
T  16953160 gtggttgatagtctgccttgcacaattttgggtagtaccacgaaacgtcttaaa 16953107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 48276681 - 48276749
Alignment:
Q  43 ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||   |||||| ||||||||||||||||| |||||||| || ||||| ||| ||||||||    
T  48276681 ttgcacaattttgaacagtgcaacaaaacgtcttaaagagagcgacctgat-cgtgattcaacctagtaa 48276749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 51697993 - 51697897
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| ||||||||||||  |||||| ||  |||||||||||| | ||||| ||  | ||||||||| |||||||| | |||||||    
T  51697993 cgtggttgatagtctgccttgcacaattttgagcagtgtcatgaaacgtcttaaaaagagcgatctggt-cgtgactcaacctagtaacaacttcggt 51697897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 87
Target Start/End: Original strand, 52691091 - 52691136
Alignment:
Q  42 cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcga 87  Q
    ||||||||||||| ||||| | |||||||||||||||||| |||||    
T  52691091 cttgcacaattttgggcagagtcacaaaacgtcttaaagagagcga 52691136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 19954350 - 19954211
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||| || | |||||| ||||||||| |||||||||    
T  19954350 gtcgtggttgatagtctgcttgtacaattttgggcagtgccacaaaacgtcttaaagagagcgatctagtctgcgactcaacctagtaatctcttcggtg 19954251  T
Q  124 aca-aaaatgattttttaactaattttgactattgttcca 162  Q
    ||| |||||   ||||||||||||||||||||||||||||    
T  19954250 acagaaaatatatttttaactaattttgactattgttcca 19954211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 4544271 - 4544410
Alignment:
Q  27 gtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgaca 126  Q
    |||||||||||||| |||||||||||||  |||||||||  |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||     
T  4544271 gtggttgatagtctacttgcacaattttgagcagtgccatgaaacgtcttaaagagagcgacctagtccgtgactcagcctagtaatctcttcggtgact 4544370  T
Q  127 aaaatgat-tttttaactaattttgactattgttccaaca 165  Q
     |||  || |||||||||||||||||||||||||| ||||    
T  4544371 gaaaaaatatttttaactaattttgactattgttctaaca 4544410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 28 - 159
Target Start/End: Complemental strand, 19949892 - 19949760
Alignment:
Q  28 tggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaa 127  Q
    ||||||||||||||||||| ||||||| ||||||||||| |||| ||||||||| |||||| || ||||||||||||||||||||| ||||||||||||     
T  19949892 tggttgatagtctgcttgctcaattttgggcagtgccacgaaacttcttaaagagagcgacgtagtccgtgactcagcctagtaatctcttcggtgacag 19949793  T
Q  128 aaatgat-tttttaactaattttgactattgtt 159  Q
    |||  || |||||||||||||||||||| ||||    
T  19949792 aaaaaatatttttaactaattttgactactgtt 19949760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 34517318 - 34517179
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    ||||||||||||||||| ||||||||||||| | ||||||||| ||||||||||||| || ||| ||| || |||||||| |||| |||| ||||| |||    
T  34517318 gtcgtggttgatagtctccttgcacaatttt-gacagtgccacgaaacgtcttaaaggaaacgatctactctgtgactcaacctaataatctcttcagtg 34517220  T
Q  124 acaaaaatgattttttaactaattttgactattgttccaaca 165  Q
    ||| |||  |||||| ||||||||||||||||||||||||||    
T  34517219 acataaaatattttt-aactaattttgactattgttccaaca 34517179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 2470065 - 2469910
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcct-ag 109  Q
    |||| |||| || ||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| | ||  |||| |||| |     
T  2470065 ttatcctggggacgtcgtagttgatagtctgcttgcacaattttgagcagtgccacaaaacgtcttaaagagagcgacctagttcgcaactctgcctgat 2469966  T
Q  110 taatatcttcggtgacaaaaatgattttttaactaattttgactattgttccaaca 165  Q
     ||| |||||||||||| |||    |||||||| |||||||||||||||| |||||    
T  2469965 aaatctcttcggtgacagaaaaatatttttaaccaattttgactattgtttcaaca 2469910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 27236356 - 27236497
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    ||||||||||||||| || |||||||| |||  ||||||||||||||| ||| |||||||||||| || |||| || |||||||| |||| ||||  |||    
T  27236356 gtcgtggttgatagtttgtttgcacaactttgagcagtgccacaaaacatctcaaagaaagcgacatagtccgcgaatcagcctaataatctcttttgtg 27236455  T
Q  124 aca--aaaatgattttttaactaattttgactattgttccaac 164  Q
    | |  ||||| |||||||||||||||||| |||||||| ||||    
T  27236456 atagtaaaat-attttttaactaattttggctattgttacaac 27236497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 1807548 - 1807452
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||| ||| |||||||||||||| ||||||||| | ||||||||| |||||||| | |||||||    
T  1807548 cgtggttgatagtctgccttgcacaattttgggcagtgtcacgaaacgtcttaaagagagcgacctagt-cgtgactcaacctagtaacaacttcggt 1807452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 31449885 - 31449971
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| ||||||||    
T  31449885 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 31449971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 33416623 - 33416527
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| | ||||||  | ||||||||| |||||||| | |||||||    
T  33416623 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagaccgacctggt-cgtgactcaacctagtaacaacttcggt 33416527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 44925942 - 44926038
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||| ||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  44925942 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgttttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 44926038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 40125904 - 40125999
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcgg 121  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||| ||  | ||||||||| |||||||| | ||||||    
T  40125904 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgatctggt-cgtgactcaacctagtaacaacttcgg 40125999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 17953892 - 17953955
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgac 88  Q
    ||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  17953892 cgtggttgatattctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagaaagcgac 17953955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 34118542 - 34118456
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| ||||||||  | ||||||||| ||||||||    
T  34118542 cgtggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 34118456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 36683655 - 36683569
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||||||| || ||||||||| ||||||||||| |||||||||||||| ||||||||| | | ||||||| ||||||||    
T  36683655 cgtggttgatagtctgccttacacaattttgggcagtgccacgaaacgtcttaaagagagcgacctagt-catgactcaacctagtaa 36683569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 19166710 - 19166597
Alignment:
Q  26 cgtggttgatagtctgct-tgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt-g 123  Q
    |||||||||||||||||  ||||||||||| ||||||||||| |||||||||||||| |||||| |  | ||||||||| |||||||| | ||||||| |    
T  19166710 cgtggttgatagtctgccgtgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacatggt-cgtgactcaacctagtaacaacttcggtag 19166612  T
Q  124 acaaaaatgattttt 138  Q
    | |||||| ||||||    
T  19166611 ataaaaattattttt 19166597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 15875687 - 15875752
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||||| ||||||||    
T  15875687 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcctaaagagagcgacct 15875752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 17026011 - 17025915
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||| ||||||||||| |||||||||| || ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  17026011 cgtgattgatagtctgtcttgcacaatgttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 17025915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 17556503 - 17556407
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||| ||||||||||| |||||||||| || ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  17556503 cgtgattgatagtctgtcttgcacaatgttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 17556407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 18876386 - 18876481
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| | ||||||||  | ||||||||| |||||||| | |||||||    
T  18876386 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaa-agagcgacctggt-cgtgactcaacctagtaacaacttcggt 18876481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 165
Target Start/End: Complemental strand, 30777122 - 30777026
Alignment:
Q  68 aaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaaaaatgattttttaactaattttgactattgttccaaca 165  Q
    |||||||||||||| || |||||| || |||||||| |||| |||| |||||| |||||||||  | ||||||||| |||||||||||| ||||||||    
T  30777122 aaacgtcttaaagagagtgacctagtctgtgactcaacctaataatttcttcgatgacaaaaaata-tttttaacttattttgactattattccaaca 30777026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 40130722 - 40130801
Alignment:
Q  42 cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  40130722 cttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 40130801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 20072184 - 20072105
Alignment:
Q  15 tctggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatc 94  Q
    |||||||| ||||||||||||| ||| ||||||||||||| || | || ||| ||| |||||||||| ||||||||||||    
T  20072184 tctggagacgtcgtggttgataatctacttgcacaattttaggaaatgtcacgaaatgtcttaaagagagcgacctaatc 20072105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 122
Target Start/End: Original strand, 4238337 - 4238430
Alignment:
Q  29 ggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||| |||||||||||| ||||||||||  |||||| ||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  4238337 ggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtgttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 4238430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 24090703 - 24090607
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||| |||||| ||||| |||||||| ||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  24090703 cgtgattgatattctgccttgcacaactttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 24090607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 2965705 - 2965641
Alignment:
Q  27 gtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||| || ||||||||||||| ||||||||||| |||||| ||||||| ||||||||    
T  2965705 gtggttgatagtgtgtcttgcacaattttaggcagtgccacgaaacgttttaaagagagcgacct 2965641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 4243076 - 4243159
Alignment:
Q  29 ggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||||||||||||| |||||||||||| ||||||||||  |||||| ||||||| ||||||||  | ||||||||| ||||||||    
T  4243076 ggttgatagtctgccttgcacaattttgggcagtgccatgaaacgtgttaaagagagcgacctggt-cgtgactcaacctagtaa 4243159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 1910988 - 1911053
Alignment:
Q  26 cgtggttgatagtctgctt-gcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||||||||| ||||||||||    |||||||| |||||||||||||| ||||||||    
T  1910988 cgtggttgatagtctgctttgcacaattttgactagtgccacgaaacgtcttaaagagagcgacct 1911053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 28559673 - 28559769
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||| ||| |||||||||||| | ||||||||| |||||||||| ||| |||||| |  | ||||||||| |||||||| | |||||||    
T  28559673 cgtggttgatagtttgccttgcacaattttggacagtgccacgaaacgtcttatagagagcgacattgt-cgtgactcaacctagtaacaacttcggt 28559769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 43302737 - 43302794
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttgg-cagtgccacaaaacgtcttaaaga 81  Q
    ||||||||||||||| | ||||||||||||||| ||||||||| ||||||||||||||    
T  43302737 cgtggttgatagtctaccttgcacaatttttggacagtgccacgaaacgtcttaaaga 43302794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 7145894 - 7145824
Alignment:
Q  23 tgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaat 93  Q
    |||||| |||||||||||||||||||||||||   ||||| ||||||| || |||| || |||||| ||||    
T  7145894 tgtcgtagttgatagtctgcttgcacaattttaaacagtgtcacaaaatgtgttaacgagagcgacttaat 7145824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 23548651 - 23548747
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||| || ||||||||||||   ||||||||| |||||||||| ||| ||||||| |   ||||||||| |||||||| | |||||||    
T  23548651 cgtggttgatagtccgccttgcacaattttacacagtgccacgaaacgtcttatagagagcgacc-aggtcgtgactcaacctagtaacaacttcggt 23548747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 29220340 - 29220284
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaaga 81  Q
    ||||||||||||||| | ||||||||||||   ||||| ||||||||||||||||||    
T  29220340 cgtggttgatagtctaccttgcacaattttgatcagtgacacaaaacgtcttaaaga 29220284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 171732 - 171869
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| || | |||||||||||||||| |||||| ||    
T  171732 gtcgtggttgatagtctgcttgcacaattttaggcagtgccacgaaacgtcttaaagagagcgacctagtctgcgactcagcctagtaatctcttcgatg 171831  T
Q  124 acaaaaatgat-tttttaactaattttgactattgttc 160  Q
    | | |||  || ||||||||||||||||||||||||||    
T  171832 agagaaaaaatatttttaactaattttgactattgttc 171869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 6898351 - 6898514
Alignment:
Q  2 ctgggtagattattctggagatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgact 101  Q
    |||||| | |||| |||| || || |||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||| ||| |||| ||||    
T  6898351 ctgggttgtttatcctggggacgttgtggttgatagtctgcttgcacaattttggacagtgccacaaaacatcttaaagagagcgatctagtccgcgact 6898450  T
Q  102 cagcctagtaatatcttcggtgacaaaaatgattttttaactaattttgactattgttccaaca 165  Q
    |||||||||||| |||||||||||| |||    ||||||||||||||||||| |||||| ||||    
T  6898451 cagcctagtaatctcttcggtgacagaaaaatatttttaactaattttgactcttgttctaaca 6898514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 29478176 - 29478314
Alignment:
Q  28 tggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgacaa 127  Q
    |||||||||||||| |||||||||||| ||||||||||| ||||||||| |||| |||||| || |||  |||||||||||||| | |||||| |||||     
T  29478176 tggttgatagtctgtttgcacaattttgggcagtgccacgaaacgtcttgaagagagcgacttagtccacgactcagcctagtagtctcttcgatgacag 29478275  T
Q  128 aaatgattttttaactaa-ttttgactattgttccaaca 165  Q
    |||    ||| ||||||| |||| |||||||||||||||    
T  29478276 aaaaatctttataactaattttttactattgttccaaca 29478314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 1289353 - 1289451
Alignment:
Q  27 gtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtgac 125  Q
    ||||||||||||||||||||| ||||||  | |||| |||||||||||||||||| ||||||||| || | || ||| ||||||||| |||||||||||    
T  1289353 gtggttgatagtctgcttgcataattttgagtagtgtcacaaaacgtcttaaagagagcgacctattctgcgattcaacctagtaatctcttcggtgac 1289451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 9650986 - 9651082
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  9650986 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 9651082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 4579584 - 4579498
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| ||||||||    
T  4579584 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 4579498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 8268378 - 8268304
Alignment:
Q  17 tggagatgtcgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||| || |||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||||||||    
T  8268378 tggaggtggcgtggttgatagtctgtcttgcacaattttggacagtgccacaaaacgtcttaaagagagcgacct 8268304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 8076126 - 8076061
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  8076126 cgtggttgatagtctgtcttgcacaattttaggcagtgccacgaaacgtcttaaagagagcgacct 8076061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 23866144 - 23866079
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  23866144 cgtggttgatagtctgtcttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacct 23866079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 26341275 - 26341179
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  26341275 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaatgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 26341179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 4930309 - 4930213
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||| || ||| ||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  4930309 cgtggttgatagtatgacttacacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 4930213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 23246952 - 23247017
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||| ||||||||| ||||||||    
T  23246952 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacatcttaaagagagcgacct 23247017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 44510696 - 44510792
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| ||||||||||||| | |||||||||||||||||||||||| ||| | ||  | ||||||||| |||||||| | |||||||    
T  44510696 cgtggttgatagtctgtcttgcacaattttggacagtgccacaaaacgtcttaaagagagcaatctggt-cgtgactcaacctagtaacaacttcggt 44510792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 23616399 - 23616544
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggca----gtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttc 119  Q
    ||||||||||||||| ||||||||||||||| | ||    || ||| ||||  ||||||| | |||||  || |||  ||||| ||||| ||||||||||    
T  23616399 gtcgtggttgatagtatgcttgcacaattttggacaatcagtaccaaaaaagatcttaaaaagagcgatttagtccacgactccgcctaataatatcttc 23616498  T
Q  120 ggtgacaaaaatgattttttaactaattttgactattgttccaaca 165  Q
    ||||||  |||  |||||||| |||||||||| |||||||||||||    
T  23616499 ggtgactgaaaatattttttacctaattttgattattgttccaaca 23616544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 27238318 - 27238232
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||| |||||||||||| || |||||||||  ||||||||||||||||||||||||| ||||||||  | ||||||||| ||||||||    
T  27238318 cgtgattgatagtctgccttacacaattttgagcagtgccacaaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 27238232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 12254155 - 12254090
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||| |||||||||||| |||||||| ||| |||||||||||||||| ||||||||| ||||||||    
T  12254155 cgtgattgatagtctgccttgcacaactttaggcagtgccacaaaacatcttaaagagagcgacct 12254090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 42627216 - 42627281
Alignment:
Q  26 cgtggttgatagtctgctt-gcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||||||||| |||||||||| ||  ||||||| |||||||||||||| ||||||||    
T  42627216 cgtggttgatagtctgctttgcacaattttgggttgtgccacgaaacgtcttaaagagagcgacct 42627281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 6591002 - 6591054
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtctta 77  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  6591002 cgtggttgatagtctgccttgcacaattttagacagtgccacaaaacgtctta 6591054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 44423160 - 44423242
Alignment:
Q  30 gttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||| ||| |||||||| | ||||||||| |||||||||||||| ||||| || || ||||||||| ||||||||    
T  44423160 gttgatagtctgccttgaacaattttggtcagtgccacgaaacgtcttaaagagagcgatctgat-cgtgactcaacctagtaa 44423242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 3357642 - 3357747
Alignment:
Q  17 tggagatgtcgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatat 115  Q
    |||||| | ||||||||||||||||| |||||||| ||| ||| || || | |||||||||||||| ||||||||  | ||||||||| |||||||| |     
T  3357642 tggagacggcgtggttgatagtctgccttgcacaactttgggctgtaccgcgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaa 3357740  T
Q  116 cttcggt 122  Q
    |||||||    
T  3357741 cttcggt 3357747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 25832652 - 25832708
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttgg-cagtgccacaaaacgtcttaaa 79  Q
    |||||| |||||||| |||||||| ||||||||| ||||||||| ||||||||||||    
T  25832652 gtcgtgattgatagtttgcttgcataatttttgggcagtgccacgaaacgtcttaaa 25832708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 13314255 - 13314341
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||| ||||||||| | |||||||||||| |||||| |||| |||||||||||||| ||||| ||  | ||||||||| ||||||||    
T  13314255 cgtggctgatagtctaccttgcacaattttgggcagtaccacgaaacgtcttaaagagagcgatctggt-cgtgactcaacctagtaa 13314341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 10388415 - 10388480
Alignment:
Q  56 ggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||| ||||||||||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  10388415 ggcaatgccacaaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 10388480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 25543398 - 25543467
Alignment:
Q  42 cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||| |||||| |||| ||||||||||||||  ||||||| ||  |||||||| ||||||||    
T  25543398 cttgcacaattttaggcagtaccacgaaacgtcttaaagagtgcgacctgat-tgtgactcaacctagtaa 25543467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 29151010 - 29150914
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||| ||| ||||||||||||  |||||| ||| |||||||||||| | ||||| ||  | ||||||||| |||||||| | |||||||    
T  29151010 cgtggttgatagtttgccttgcacaattttgagcagtgtcacgaaacgtcttaaaaagagcgatctggt-cgtgactcaacctagtaacaacttcggt 29150914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 165
Target Start/End: Complemental strand, 35129709 - 35129566
Alignment:
Q  21 gatgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcg 120  Q
    |||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||| ||||||||| || | |||||||  ||||||| | ||||    
T  35129709 gatgtcgtggttgatagtctgcttgcacaattttgggcagtgccatgaaacgtcttaaagagagcgacctagtctgcgactcagtatagtaatcttttcg 35129610  T
Q  121 gtgacaaaaatgattttttaactaattttgactattgttccaaca 165  Q
     ||||  |||  | |||||||||||||||||||||||||||||||    
T  35129609 atgacggaaaata-tttttaactaattttgactattgttccaaca 35129566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 165
Target Start/End: Complemental strand, 14041768 - 14041627
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggtg 123  Q
    ||||||||||||||  ||| ||||||||||| ||||||| ||| |||||| ||||||| |||||||||||||| |||| || |||||||| |||||| ||    
T  14041768 gtcgtggttgataga-tgcatgcacaattttaggcagtgtcacgaaacgttttaaagagagcgacctaatccgcgactaagtctagtaatctcttcgatg 14041670  T
Q  124 acaaaaatgatttttt-aactaattttgactattgttccaaca 165  Q
    |||||| |  |||||| ||||||||||||||||||||||||||    
T  14041669 acaaaattatttttttaaactaattttgactattgttccaaca 14041627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 32815079 - 32815220
Alignment:
Q  23 tgtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||   ||||||| |||| || | ||||||||||| | || | |    
T  32815079 tgtcgtggttgatagtctgcttgcacaattttgggcagtgccgcgaaacgtcttaaagaggacgacctagtccgcgaataagcctagtaatctttttgat 32815178  T
Q  123 gacaaaaatgat-tttttaactaattttgactattgttccaa 163  Q
    ||||||||  || ||||||| |||||||||||||||||||||    
T  32815179 gacaaaaaaaatatttttaattaattttgactattgttccaa 32815220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 6407879 - 6407975
Alignment:
Q  26 cgtggttgatagtctgctt-gcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||||| | |||||||| ||||||||||| ||||||||| |||| |||||||| || ||||||||| |||||||| | |||||||    
T  6407879 cgtggttgatagtctgctttgtacaattttgggcagtgccacgaaacgtcttcaagagagcgacctgat-cgtgactcaacctagtaacaacttcggt 6407975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 29892281 - 29892366
Alignment:
Q  27 gtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||||||||||| || ||||||||||||| ||||||||||| |||| ||||||||| |||||||| | |||||||||| ||||||||    
T  29892281 gtggttgatagtttgtcttgcacaattttgggcagtgccaccaaacttcttaaagagagcgacctga-ccgtgactcaacctagtaa 29892366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 11570768 - 11570833
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||    
T  11570768 cgtggttgattgtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacct 11570833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 123
Target Start/End: Complemental strand, 12689062 - 12688950
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctag 109  Q
    |||| ||||||| | ||||||||||||||||| |||||||||||| ||||||  |||||||||||||||||| || |||||  | | ||||||| |||||    
T  12689062 ttatcctggagacggcgtggttgatagtctgccttgcacaattttgggcagtatcacaaaacgtcttaaagagagtgacctggt-catgactcaacctag 12688964  T
Q  110 taatatcttcggtg 123  Q
    ||| | ||||||||    
T  12688963 taacaacttcggtg 12688950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 33687607 - 33687687
Alignment:
Q  11 ttattctggagatgtcgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    |||| ||||||| | | |||||||||||||| ||||||||||||| | ||||||||| |||||||||||||| ||||||||    
T  33687607 ttatcctggagacggcatggttgatagtctgtcttgcacaattttggccagtgccacgaaacgtcttaaagagagcgacct 33687687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 21309107 - 21309045
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcga 87  Q
    ||||||||||||||||| |||||||||||| ||||||||||  |||||||||||||| |||||    
T  21309107 cgtggttgatagtctgcattgcacaattttgggcagtgccatgaaacgtcttaaagagagcga 21309045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 2700125 - 2700221
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||||||| |||||||||||||   ||||||||| |||||||||||||| ||||| ||  | ||||||||| |||||||| | |||||||    
T  2700125 cgtggttgatagtctgtcttgcacaattttgaacagtgccacgaaacgtcttaaagagagcgatctggt-cgtgactcaacctagtaacaacttcggt 2700221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 19674385 - 19674293
Alignment:
Q  30 gttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    |||||||||||| ||||||||||||| ||||||||||  |||||||||||||| || |||||  | ||||||||| |||||||| | |||||||    
T  19674385 gttgatagtctgtcttgcacaattttgggcagtgccatgaaacgtcttaaagagagtgacctggt-cgtgactcaacctagtaacaacttcggt 19674293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 16836175 - 16836231
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaaga 81  Q
    ||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||    
T  16836175 cgtggttgatagtctgccttgtacaattttgggcagtgccacgaaacgtcttaaaga 16836231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 7499228 - 7499291
Alignment:
Q  102 cagcctagtaatatcttcggtgacaaaaatgattttttaactaattttgactattgttccaaca 165  Q
    |||||||||||| |||||| ||||| |||  ||||||||||||||||| | |||||||||||||    
T  7499228 cagcctagtaatctcttcgatgacagaaaatattttttaactaattttcattattgttccaaca 7499291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 112
Target Start/End: Original strand, 11614111 - 11614197
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    ||||||||||||||||| ||||||||||||  ||||||||| ||||||| ||||||| | | |||| || ||||||||| ||||||||    
T  11614111 cgtggttgatagtctgccttgcacaattttgagcagtgccataaaacgttttaaagagaacaacctcat-cgtgactcaacctagtaa 11614197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 25316585 - 25316639
Alignment:
Q  26 cgtggttgatagtctgctt-gcacaatttttggcagtgccacaaaacgtcttaaa 79  Q
    ||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  25316585 cgtggttcatagtttgctttgcacaattttgggcagtgccacaaaacgtcttaaa 25316639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 26204079 - 26204133
Alignment:
Q  26 cgtggttgatagtctgctt-gcacaatttttggcagtgccacaaaacgtcttaaa 79  Q
    ||||||| ||||| ||||| |||||||||| ||||||||||||||||||||||||    
T  26204079 cgtggttcatagtttgctttgcacaattttgggcagtgccacaaaacgtcttaaa 26204133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 17964578 - 17964635
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaa 82  Q
    ||||||||||||||||| |||||||||||| |  |||||||| |||||||||||||||    
T  17964578 cgtggttgatagtctgccttgcacaattttggatagtgccacgaaacgtcttaaagaa 17964635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 112
Target Start/End: Complemental strand, 8747854 - 8747772
Alignment:
Q  30 gttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||||||| ||| ||||||||||||| ||||||| |||  ||||||||||||| ||||||||  | ||||||||| ||||||||    
T  8747854 gttgatagcctgtcttgcacaattttgggcagtgtcacggaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaa 8747772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 12714243 - 12714298
Alignment:
Q  24 gtcgtggttgatagtctgcttgcacaatttttggcagtgccacaaaacgtcttaaa 79  Q
    ||||| ||||||||| |||||  ||||||||| |||| ||||||||||||||||||    
T  12714243 gtcgtagttgatagtatgcttatacaattttttgcagcgccacaaaacgtcttaaa 12714298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 21795720 - 21795762
Alignment:
Q  71 cgtcttaaagaaagcgacctaatccgtgactcagcctagtaat 113  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||    
T  21795720 cgtcttaaagaaagcgacctagtccgcgactcagcctaataat 21795762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 11428103 - 11428054
Alignment:
Q  42 cttgcacaatttttgg-cagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||| |||||| ||||||||| |||||||||||||| ||||||||    
T  11428103 cttgcacaacttttgggcagtgccacgaaacgtcttaaagagagcgacct 11428054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 14775661 - 14775632
Alignment:
Q  25 tcgtggttgatagtctgcttgcacaatttt 54  Q
    ||||||||||||||||||||||||||||||    
T  14775661 tcgtggttgatagtctgcttgcacaatttt 14775632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 29610934 - 29610963
Alignment:
Q  25 tcgtggttgatagtctgcttgcacaatttt 54  Q
    ||||||||||||||||||||||||||||||    
T  29610934 tcgtggttgatagtctgcttgcacaatttt 29610963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 165
Target Start/End: Original strand, 29610986 - 29611015
Alignment:
Q  136 ttttaactaattttgactattgttccaaca 165  Q
    ||||||||||||||||||||||||||||||    
T  29610986 ttttaactaattttgactattgttccaaca 29611015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 13736714 - 13736762
Alignment:
Q  42 cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||| ||||||||||| ||||||| |||||| || |||||    
T  13736714 cttgcacaattttaggcagtgccacgaaacgtcgtaaagagagggacct 13736762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 7180 - 7084
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  7180 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 7084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 9906 - 10002
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  9906 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 10002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 166105 - 166170
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacct 90  Q
    ||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  166105 cgtggttgatagtatgtcttgcacaatttttggcagtgccacgaaacgtcttaaagagagcgacct 166170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 4150 - 4054
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  4150 cgtggttgatagtctgccttgcacaattttgggcagtgccacgaaatgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 4054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 443963 - 444011
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtc 74  Q
    ||||||||||||||||| |||||||||||| ||||||||||| |||||||    
T  443963 cgtggttgatagtctgccttgcacaatttt-ggcagtgccacgaaacgtc 444011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 25475 - 25389
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaa 112  Q
    |||||||||||||||| |||||||||||||  |||||| |||  ||||||||||||| || ||||||||  |||||||| ||||||||    
T  25475 cgtggttgatagtctgtcttgcacaattttacgcagtgtcacgtaacgtcttaaagagagtgacctaat-tgtgactcaacctagtaa 25389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 35710 - 35649
Alignment:
Q  26 cgtggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcg 86  Q
    ||||||||||||||||| |||||||||||| | ||||| ||| |||||||||||||| ||||    
T  35710 cgtggttgatagtctgccttgcacaattttggccagtgtcacgaaacgtcttaaagagagcg 35649  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 83140 - 83046
Alignment:
Q  28 tggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaatatcttcggt 122  Q
    ||||||||||||||| ||||| |||||| ||  ||| ||| |||||||||||||| ||||||||  | ||||||||| |||||||| | |||||||    
T  83140 tggttgatagtctgccttgcataattttgggtggtgtcacgaaacgtcttaaagagagcgacctggt-cgtgactcaacctagtaacaacttcggt 83046  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 13346 - 13289
Alignment:
Q  28 tggttgatagtctgc-ttgcacaatttttggcagtgccacaaaacgtcttaaagaaag 84  Q
    ||||||||||||| | ||| |||||||| ||||||| ||| |||||||||||||||||    
T  13346 tggttgatagtctaccttgaacaattttgggcagtgtcaccaaacgtcttaaagaaag 13289  T

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Target: scaffold2020 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold2020
Description:

Target: scaffold2020; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 447 - 360
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaat 113  Q
    ||||||||||||| || ||||||||| ||| | || |||||  |||||||||||| |||||||| || | ||||||||| |||||||||    
T  447 cgtggttgatagtgtgtcttgcacaactttggacaatgccatgaaacgtcttaaaaaaagcgacatagt-cgtgactcaacctagtaat 360  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 165048 - 165135
Alignment:
Q  26 cgtggttgatagtctg-cttgcacaatttttggcagtgccacaaaacgtcttaaagaaagcgacctaatccgtgactcagcctagtaat 113  Q
    ||||||||||||| || ||||||||| ||| | || |||||  |||||||||||| |||||||| || | ||||||||| |||||||||    
T  165048 cgtggttgatagtgtgtcttgcacaactttggacaatgccatgaaacgtcttaaaaaaagcgacatagt-cgtgactcaacctagtaat 165135  T

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