View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14077_low_4 (Length: 362)
Name: NF14077_low_4
Description: NF14077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14077_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 40409487 - 40409817
Alignment:
| Q |
11 |
aagaatatgagtacgtactagtgaatactaaagattacttttagattgcattaacgttggctaatcctttaaatcagaaactgctcttgtcatagacaaa |
110 |
Q |
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| T |
40409487 |
aagaaaatgagtacgtactagtgaatactatagattacttttagattgcattaacgttggctaatcccttaaatcagaaactgctcttgccatagacaaa |
40409586 |
T |
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| Q |
111 |
ttaaattttgtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaaactgaaaatcacatgctataccaataagtc |
210 |
Q |
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| T |
40409587 |
ttaaagtt-gtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaagctgaaaatcacatgtgataccaataagtc |
40409685 |
T |
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| Q |
211 |
catgcacaaatgacaacgagaaggaaggtttgagttcctcttacattcaatcataatcaaatcaagatctaggaacacttgtgcagaagaaggtgaagtc |
310 |
Q |
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| T |
40409686 |
catgcagaaatgaca--gagaaggaaggtttgagttcctcttacattcaagcatcatcaaatcaagatctaggaacacttgtgcagaagaaggtgaagtc |
40409783 |
T |
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| Q |
311 |
acttataattgctgtatatgtggttgcttgatgc |
344 |
Q |
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| T |
40409784 |
acttatatttactgtatatgtggttgcttgatgc |
40409817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 40456857 - 40456739
Alignment:
| Q |
118 |
ttgtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaaactgaaaatcacatgctataccaataagtccatgcac |
217 |
Q |
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| T |
40456857 |
ttgtagtgtttttgtaggcacgaatatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaac |
40456758 |
T |
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| Q |
218 |
aaatgacaacgagaaggaa |
236 |
Q |
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| T |
40456757 |
aaatgacaacaagaaggaa |
40456739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 40362890 - 40362998
Alignment:
| Q |
125 |
gcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaaactgaaaatcacatgctataccaataagtccatgcacaaatgac |
224 |
Q |
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||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||| || || |||| ||| |||||||| ||||| ||||||||||| |
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| T |
40362890 |
gcttttgtaggcacgaatatgaatccataaaaaagatagtggaaagggccattgaagctaaatatcaaatgtgataccaattagtccttgcacaaatgat |
40362989 |
T |
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| Q |
225 |
aacgagaag |
233 |
Q |
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| T |
40362990 |
aactagaag |
40362998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 40362688 - 40362724
Alignment:
| Q |
32 |
tgaatactaaagattacttttagattgcattaacgtt |
68 |
Q |
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| T |
40362688 |
tgaatactatagattacttttagattgcattaacgtt |
40362724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 40457066 - 40456962
Alignment:
| Q |
11 |
aagaatatgagtacgtactagtgaatactaaagattacttttagattgcattaacgttggctaatcctttaaatcagaaactgctcttgtcatagacaaa |
110 |
Q |
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||||| |||||||||||||||| ||||||| | ||||||||||| ||| |||| || ||||||||| ||| ||||||| | ||||||| |||||| |
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| T |
40457066 |
aagaaaatgagtacgtactagtaaatactataaattacttttagtttgtattagtattttctaatccttctaatgagaaactattattgtcatggacaaa |
40456967 |
T |
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| Q |
111 |
ttaaa |
115 |
Q |
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||||| |
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| T |
40456966 |
ttaaa |
40456962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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