View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14077_low_6 (Length: 332)
Name: NF14077_low_6
Description: NF14077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14077_low_6 |
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| [»] chr2 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 332
Target Start/End: Original strand, 1018578 - 1018890
Alignment:
| Q |
20 |
agcccttgatctaacacgttggttcttaataccccaatcgtaagcatctcgcaaatcacaagtcatctaattacaaaattttgccgggctgtaaatttta |
119 |
Q |
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| T |
1018578 |
agcccttaatctaacacattggttcttaacaccccaatcgtaagcatctcgcaaatcacaagccatctaattacaaaattttgccgggctgtaaatttta |
1018677 |
T |
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| Q |
120 |
agcaccttttcctgactactaaactaccttttataataattgagttttcttgtgcaggataactacctggtaacctatgacaacaaaactaaatcttcaa |
219 |
Q |
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| T |
1018678 |
agcaccttttcctgactactaaactaccttttataataattgagttttcttgtgcaggataactacctggtaacctatgacaacaaaactaaatcttcaa |
1018777 |
T |
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| Q |
220 |
aaagatcatttagatctaagtccttcatagggctatcaaaacattatatggattcaaaagaaagacatgaatttcttttagaaaacaactactaatttat |
319 |
Q |
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| T |
1018778 |
aaagatcatttagatctaagtccttcatagggctatcaaaacattatatggattcaaaagaaagacatgaatttcttttagaaaacaactactaatttat |
1018877 |
T |
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| Q |
320 |
tcttcgtgtgtgc |
332 |
Q |
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| T |
1018878 |
tcttcgtgtgtgc |
1018890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 1014159 - 1014279
Alignment:
| Q |
122 |
caccttttcctgactactaaactaccttttataataattgagttttc-ttgtgcaggataactacctggtaacctatgacaacaaaactaaatcttcaaa |
220 |
Q |
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| T |
1014159 |
caccttttcctacctactaaaccaccctttataataacttattattccttgcccagcttaactgcctagtaacctatgacaacaaaaccaaatcttcaaa |
1014258 |
T |
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| Q |
221 |
aagatcatttagatctaagtc |
241 |
Q |
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| T |
1014259 |
cagatcatttagatctaagtc |
1014279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 1010115 - 1010161
Alignment:
| Q |
195 |
tatgacaacaaaactaaatcttcaaaaagatcatttagatctaagtc |
241 |
Q |
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| T |
1010115 |
tatgacaacaaaaccaaatctataaacagatcatttagatctaagtc |
1010161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 180 - 332
Target Start/End: Complemental strand, 8317178 - 8317026
Alignment:
| Q |
180 |
aactacctggtaacctatgacaacaaaactaaatcttcaaaaagatcatttagatctaagtccttcatagggctatcaaaacattatatggattcaaaag |
279 |
Q |
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| T |
8317178 |
aactacctggtaacctatgacagcaaaactaaatcttcaaaaagatcatttagatctaagtccttcatagcgctatcaaaacattatatggattcaaaag |
8317079 |
T |
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| Q |
280 |
aaagacatgaatttcttttagaaaacaactactaatttattcttcgtgtgtgc |
332 |
Q |
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| T |
8317078 |
aaagacatgaatttcttttagaaaacaactactaatttattcttcgtgtgtgc |
8317026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 8317299 - 8317171
Alignment:
| Q |
20 |
agcccttgatctaacacgttggttcttaataccccaatcgtaagcatctcgcaaatcacaagtcatctaattacaaaattttgccgggctgtaaatttta |
119 |
Q |
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| T |
8317299 |
agcccttaatctaacacattggttcttaatatcccaatcgtaagcatctcgcaaatcacaagtcatctaattacaaaattttgccgggcagtaaatttta |
8317200 |
T |
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| Q |
120 |
agcaccttttcctgactactaaactacct |
148 |
Q |
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| T |
8317199 |
agcaccttttcctgactactaaactacct |
8317171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 40638733 - 40638687
Alignment:
| Q |
189 |
gtaacctatgacaacaaaactaaatcttcaaaaagatcatttagatc |
235 |
Q |
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| T |
40638733 |
gtaacctatgacaacaaaaccaaatctccaaacagatcatttagatc |
40638687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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