View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14077_low_8 (Length: 215)
Name: NF14077_low_8
Description: NF14077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14077_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 2289931 - 2289733
Alignment:
| Q |
1 |
atatcaatagcggaaccggcagaaaaacttcttgagaaatctttggatcctgttgttgctgaaaaactgtcaggggaggcaccagttgagttggaaaaag |
100 |
Q |
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| T |
2289931 |
atatcaatggcggaaccggcagaacaacttcttgagaaatctttggatcctgttgttgctgaaaaactgtcaggggaggcaccagttgagttggaaaaag |
2289832 |
T |
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| Q |
101 |
aaaacagtacagctgaattggaaaagcctcaagtggaagaaccatctctggcggaaccggtggaacaactttctgtggaagctttggacgctgttgttg |
199 |
Q |
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| T |
2289831 |
aaaacagaacagctgaattggaaaagcctcaagtggaagaaccatctctggcggaaccggtggaacaactttctgtggaagctttggacgctgttgttg |
2289733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 171
Target Start/End: Complemental strand, 2289957 - 2289902
Alignment:
| Q |
116 |
aattggaaaagcctcaagtggaagaaccatctctggcggaaccggtggaacaactt |
171 |
Q |
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| T |
2289957 |
aattggaaaagcctcaagtggaagaaatatcaatggcggaaccggcagaacaactt |
2289902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 2290147 - 2290079
Alignment:
| Q |
118 |
ttggaaaagcctcaagtggaagaaccatctctggcggaaccggtggaacaactttctgtggaagctttg |
186 |
Q |
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||||||||||||||||||||||| | ||| || | ||||||||| ||||| |||||| ||||||||| |
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| T |
2290147 |
ttggaaaagcctcaagtggaagacacttctatgactgaaccggtgaaacaagtttctgaagaagctttg |
2290079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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