View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14078_high_2 (Length: 530)
Name: NF14078_high_2
Description: NF14078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14078_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Complemental strand, 28208716 - 28208267
Alignment:
| Q |
19 |
atgtggaagaacttgaactaa----agtatcacattaaatattttcatgtaatcgatgtcggacttttaacattaagagtcggtgtttatgatggctttc |
114 |
Q |
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| T |
28208716 |
atgtggaagaacttgagctaattaaagtatcacattaaatattttcatgtaatcgatgtcggacttttaacattaagagtcggtgtttatgatggctttc |
28208617 |
T |
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| Q |
115 |
cgtcaaccgacattgatcggatgataactcttttatttatggagacttcacatagatatcaatatttggttgaacactttaatcaaagtttagacgttgc |
214 |
Q |
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| T |
28208616 |
cgtcaaccgacattgattggatgataactcttttatttatggagacttcacatagatatcaatatttggttgaacactttaatcaaagtttagatgttgc |
28208517 |
T |
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| Q |
215 |
tctgtcattggtatacctcaatgaaatcatcaattgttatgaccttatctaggtgtgcgaggagaacacaaaccaaaaagcgaacattaaacaaaagagt |
314 |
Q |
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| T |
28208516 |
tctgtcattggtatacctcaatgaaatcatcaattgttatgaccttatctaggtgtgcgaggagaacacaaaccaaaaagcgaacattaaacaaaagagt |
28208417 |
T |
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| Q |
315 |
cgcatgacttaaatatcacatcgaacatttttatgtactagat-tgaaatttctaataacttcggagttgatttttctcaacgtttttgcagtgnnnnnn |
413 |
Q |
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| T |
28208416 |
cgcatgacttaaatatcacatcgaacatttttatgtactagatgtgagatttctaataatttcggagatgatttttctcaacgtttttgcagtgttcttt |
28208317 |
T |
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| Q |
414 |
nnacccctccatgaactaattctctttgatgaatgttgcataaaatgata |
463 |
Q |
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| T |
28208316 |
ttacccctccatgaactaattctctttgatgaatgttgcataaaatgata |
28208267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 210 - 459
Target Start/End: Complemental strand, 28207433 - 28207188
Alignment:
| Q |
210 |
gttgctctgtcattggtatacctc--aatgaaatcatcaattgttatgaccttatctaggtgtgcgaggagaacacaaaccaaaaagcgaacattaaaca |
307 |
Q |
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| T |
28207433 |
gttgctctttcattggtctacctctcaatgaagtcatcgattgttatgacct-----aggcgtgcgaggagaacacaaaccaaaaatcgaacattaaatc |
28207339 |
T |
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| Q |
308 |
aaagagtcgcatgacttaaatatcacatcgaacatttttatgtactagat-tgaaatttctaataacttcggagttgatttttctcaacgtttttgcagt |
406 |
Q |
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| T |
28207338 |
aaagagtcgcatgacttaaatatcacatcgaacacttttatatactagatgtgagatttctaataacttaagagttgatttttctcaac-tttttgcact |
28207240 |
T |
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| Q |
407 |
gnnnnnnnnacccctccatgaactaattctctttgatgaatgttgcataaaat |
459 |
Q |
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| T |
28207239 |
g-tttttttacccctccatgaactaattctctttgatcaatgttgcataaaat |
28207188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 210 - 530
Target Start/End: Complemental strand, 28208064 - 28207750
Alignment:
| Q |
210 |
gttgctctgtcattggtatacctc--aatgaaatcatcaattgttatgaccttatctaggtgtgcgaggagaacacaaaccaaaaagcgaacattaaaca |
307 |
Q |
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| T |
28208064 |
gttgctttgtcattggtctacctctcaatgaaatca---attgttatgacct-----aggcgtgcgaggagaacacaaaccaaaaatcgaacattaaatg |
28207973 |
T |
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| Q |
308 |
aaagagtcgcatgacttaaatatcacatcgaacatttttatgtactagat-tgaaatttctaataacttcggagttgatttttctcaacgtttttgca-- |
404 |
Q |
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| T |
28207972 |
aaagagtcacatgacttaaatatcacatcgaacatttatatgtactagatgtgagatttctaataactt-taagttgatttttctcaac-tttttgcact |
28207875 |
T |
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| Q |
405 |
gtgnnnnnnnnacccctccatgaactaattctctttgatgaatgttgcataaaatgata-aaatgatagaaatgacaactcatgttccataatgtagata |
503 |
Q |
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| T |
28207874 |
gttttttttttacctctccatgaactaattctctttgatgaattctgcataaaatgatagaaatg--acaattttttcctcatgttccatgttgtagata |
28207777 |
T |
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| Q |
504 |
attttattaagggaaatgttaacgagt |
530 |
Q |
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| T |
28207776 |
attttattaagggaaatgttaacgagt |
28207750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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