View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14078_high_9 (Length: 240)
Name: NF14078_high_9
Description: NF14078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14078_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42089294 - 42089533
Alignment:
| Q |
1 |
caagaaataattatattattctataatgcgtgggtgagtgatctcaaagaaacataactgagacggcacggcacacattgggaagatttcagttggagca |
100 |
Q |
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| T |
42089294 |
caagaaatcattatattattctataatgcgtgggtgagtgatctcaaagaaacataactgggacggcacggcacacattgggaagatttcagttggagca |
42089393 |
T |
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| Q |
101 |
taataattaaatatatatgatgagtttggaaaattagctttgaagattaataaaatacattttgtgcattcacgtggtcataataaacctgttggttatg |
200 |
Q |
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| T |
42089394 |
taataattaaatatatatgatgagtttggaaaattagctttgaagattaataaaatacattttgtgcattcacgtgatcataataaacctgttggttatg |
42089493 |
T |
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| Q |
201 |
aattatgcacatgaagacttcatcttttttcgggttcata |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42089494 |
aattatgcacatgaagacttcatcttttttcgggttcata |
42089533 |
T |
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