View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14078_low_3 (Length: 482)
Name: NF14078_low_3
Description: NF14078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14078_low_3 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Original strand, 40381454 - 40381916
Alignment:
| Q |
17 |
atgatggaatctaaagaataattgaaatgaccaagtaatataggttcatctttccttaaatgcagagggagcaagtaaaaaggacaaccctgcacagagc |
116 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381454 |
atgatggaacctaaagaataattgaaatgaccaagtaatataggttcatctttccttgaatgcagagggagcaagtaaaaaggacaaccctgcacagagc |
40381553 |
T |
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| Q |
117 |
tgatacaaaagctctctgtgtgaaacattaaaaattaaccaattataatgtggttttcaagatatgcaaaagtagtatcacaatcatatcatatatactt |
216 |
Q |
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| T |
40381554 |
tgatacaaaagctctctgtg--aaacattaaaaattaatcaattataatgtgattttcaagatatgcaaa-gtagtatcacaatcatatcatatatactt |
40381650 |
T |
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| Q |
217 |
atttactgaatttggacttgtgaaacaacaagactaatttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaa |
316 |
Q |
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| T |
40381651 |
atttactgaattcggacttgtgaaacaacaagactaatttaattcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaa |
40381750 |
T |
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| Q |
317 |
tcagacccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccac |
416 |
Q |
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| T |
40381751 |
tcagacccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccac |
40381850 |
T |
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| Q |
417 |
tacttgtcttctgatgttggtcaaacatcatttgcaacttccttccttgttcctctattcgcaact |
482 |
Q |
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| T |
40381851 |
tacttgtcttctgatgttggtcaaacatcatcttcaacttccttccttattcctctattcgcaact |
40381916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 161 - 482
Target Start/End: Original strand, 22812162 - 22812481
Alignment:
| Q |
161 |
ataatgtggttttcaagatatgcaaaagtagtatcacaatcatatcatatatactt--atttactgaatttggacttgtgaaacaacaagactaatttaa |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |
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| T |
22812162 |
ataatgtggttttcaagatatgcaaaagtagtatcacactcatatcatatatacttttatttactgaatttggatttgtaaaacaacaagactaatttaa |
22812261 |
T |
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| Q |
259 |
ttcccattaaaaaattgtatctatggtttggtttactgtcagttatgagcattgagaatcagacccttcaaaaatggtaacctcaatatctttaggactt |
358 |
Q |
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| T |
22812262 |
ttcccattacaaaattgtat----ggtttggttttctgtcagttatgagtattgagaatgagacccttcaaaaatggtaacctcaatatctttaggacta |
22812357 |
T |
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| Q |
359 |
attggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactacttgtcttctgatgttggtcaaacatcatttgcaacttcc |
458 |
Q |
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| T |
22812358 |
attggtgtatcattgtttggtgtattgtccaaattttgagtgttcaattggcaagtactatttgtcttctgttgttggtcaaacatcatcttcaactgct |
22812457 |
T |
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| Q |
459 |
ttccttgttcctctattcgcaact |
482 |
Q |
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| T |
22812458 |
ttccttgttcctctattcgcaact |
22812481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 322 - 444
Target Start/End: Original strand, 22809496 - 22809618
Alignment:
| Q |
322 |
cccttcaaaaatggtaacctcaatatctttaggacttattggtatatcattgtttgctgtattgtccaaattttgagtgttcaattggccaccactactt |
421 |
Q |
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|||||||||||| | || |||| |||||||||| || ||||| |||||||||||| |||| |||||||||| ||||||||| |||||||| ||||||| |
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| T |
22809496 |
cccttcaaaaattgaaatctcagtatctttaggcctgtttggtttatcattgtttgatgtaatgtccaaattccgagtgttcatttggccactactactt |
22809595 |
T |
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| Q |
422 |
gtcttctgatgttggtcaaacat |
444 |
Q |
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| T |
22809596 |
ctcttctgctgttggtcaaacat |
22809618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 22793867 - 22793913
Alignment:
| Q |
45 |
gaccaagtaatataggttcatctttccttaaatgcagagggagcaag |
91 |
Q |
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| T |
22793867 |
gaccaagtaatatggattcatctatccttaaatgtagagggagcaag |
22793913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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