View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14078_low_4 (Length: 435)
Name: NF14078_low_4
Description: NF14078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14078_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 9 - 416
Target Start/End: Complemental strand, 37339388 - 37338981
Alignment:
| Q |
9 |
gagatgaatggttgagtaataaaagcatgatgagtgtcctcctcatctctttgactaattgatgtcagaaagttgccaaggataatatactatgtttgat |
108 |
Q |
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| T |
37339388 |
gagaagaatggttgagtaataaaagcatgatgagtgtcctcctcatctctttgactaattgatgtcaggaagttgccaaggataatatactatgtttgat |
37339289 |
T |
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| Q |
109 |
acttaaaactttaaatcatatccgtaacaaatgaaaatgagtaattgacaaaataaaagaaatgagagagacctgaagttgctgattcatgccaggaatt |
208 |
Q |
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| T |
37339288 |
acttaaaactttaaatcatatccgtaacaaatgaaaatgagtaattgacaaaataaaagaaatgagagagacctgaagttgctgattcatgccaggaatt |
37339189 |
T |
|
| Q |
209 |
gtataataatttgaagaacagcaattgtcatccatgctgtccagtttatcactaagcaggttcaggtgaaagaaattgtcatgttcccttgatgtgttac |
308 |
Q |
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| T |
37339188 |
gtataataatttgaagaacagcaattgtcatccatgctgtccagtttatcactaagcaggttcaggtgaaagaaattgtcatgttcccttgatgtgttgc |
37339089 |
T |
|
| Q |
309 |
atgcaatgttgttaaatctatcttccgaaatagattcaaaatcatcagaacacccttctatttccaaggtacattgaggtgggttaatgtgagataacat |
408 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37339088 |
atgccatgttgttaaatctatcttccgaaatagattcaaaatcatcagaacacctttctatttccaaggtacattgaggtgggttaatgtgagataacat |
37338989 |
T |
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| Q |
409 |
gacactta |
416 |
Q |
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| T |
37338988 |
gacactta |
37338981 |
T |
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