View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14078_low_5 (Length: 318)
Name: NF14078_low_5
Description: NF14078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14078_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 300
Target Start/End: Original strand, 17195886 - 17196173
Alignment:
| Q |
14 |
atatatatgcaaatttgcaattaacacaattttacattcacttcctttgtttgtccatatcattcatctcattaaaatataataattgaatggcaaggaa |
113 |
Q |
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| T |
17195886 |
atatatatgcaaatttgcaattaacacaattttacattcacttccactgtttgtccatatcattcatctcattaaaatataataattgaatggcaaggaa |
17195985 |
T |
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| Q |
114 |
cttatgtataagaatttcgaccagtaaaaatttaaaatcattataagaaaattgcatactga-ccctcattgattcagaatctgatttgtcactgtagga |
212 |
Q |
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| T |
17195986 |
cttatgtataagaatttcgaccagtaaaaatttaaaatcattataagaaaattgcgtactgacccctcattgattcagaatctgatttgtcactgtagga |
17196085 |
T |
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| Q |
213 |
cattttggtttcaaaacttatagctgttcaaatgtactattgctttccctgctgcttatcgaaatatggttttcttcggtttgagttg |
300 |
Q |
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| T |
17196086 |
cattttggtttcaagacttatagctgttcaaatgtactattgctttccctgctgcttatcgaaacatggttttcttcggtttgagttg |
17196173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 17184520 - 17184233
Alignment:
| Q |
14 |
atatatatgcaaatttgcaattaacacaattttacattcacttcctttgtttgtccatatcattcatctcattaaaatataataattgaatggcaaggaa |
113 |
Q |
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| T |
17184520 |
atatatatgcaaatttgcaattaacacaattttacattcacttccactgtttgtccatatcattcatctcattaaaatataataattgaatggcaaggaa |
17184421 |
T |
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| Q |
114 |
cttatgtataagaatttcgaccagtaaaaatttaaaatcattataagaaaattgcatactga-ccctcattgattcagaatctgatttgtcactgtagga |
212 |
Q |
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| T |
17184420 |
cttatgtataagaatttcgaccagtaaaaatttaaaatcattataagaaaattgcgtactgacccctcattgattcagaatctgatttgtatctgtaaga |
17184321 |
T |
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| Q |
213 |
cattttggtttcaaaacttatagctgttcaaatgtactattgctttccctgctgcttatcgaaatatggttttcttcggtttgagttg |
300 |
Q |
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| T |
17184320 |
cattttggtttcaaaacttatagctgttcaaatgtactattgctttccctgctgcttatcgaaacatggttttcttcggtttgagttg |
17184233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 17193229 - 17193298
Alignment:
| Q |
219 |
ggtttcaaaacttatagctgttcaaatgtactattgctttccctgctgcttatcgaaatatggttttctt |
288 |
Q |
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| T |
17193229 |
ggtttcaaaacttatagctgtccaaatgtactattgcttgccctgctgcttatcgaaacatggttttctt |
17193298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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