View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14078_low_6 (Length: 313)

Name: NF14078_low_6
Description: NF14078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14078_low_6
NF14078_low_6
[»] chr2 (15 HSPs)
chr2 (17-297)||(30182554-30182844)
chr2 (23-141)||(30069676-30069795)
chr2 (201-297)||(30024440-30024536)
chr2 (201-297)||(30036161-30036257)
chr2 (201-297)||(30117586-30117682)
chr2 (201-297)||(30230299-30230395)
chr2 (201-297)||(30237592-30237688)
chr2 (201-297)||(30132343-30132439)
chr2 (201-297)||(30069515-30069611)
chr2 (26-125)||(30024597-30024697)
chr2 (26-125)||(30036000-30036100)
chr2 (26-125)||(30117425-30117525)
chr2 (26-125)||(30132182-30132282)
chr2 (26-125)||(30230138-30230238)
chr2 (210-286)||(30791588-30791664)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 297
Target Start/End: Original strand, 30182554 - 30182844
Alignment:
Q  17 tatcgggacataaacatataaacttaataaaaacatggaatgaaactaaactcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||    
T  30182554 tatcgggacataaacatataaacttaataaaaacatggaatgaaactaaacttgaattttgtttactttttcaagaagaaaagagcaagcagcatgacac 30182653  T
Q  117 atatctatttaatatgacatttttgctgtgtatactagaagcaactaaatatgtgcatgaatcattttgccatttgttggtaga----------gtagaa 206  Q
    |||||||||  | |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||          ||||||    
T  30182654 atatctattataaatgacatttttggtgtgtatactaaaagcaactaaatatgtgcatgaagcattttgccatttgttagtagagtattgagatgtagaa 30182753  T
Q  207 tgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgt 297  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30182754 tgcacctgttcaattgagagaagggattttgtatcaactgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgt 30182844  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 30069795 - 30069676
Alignment:
Q  23 gacataaacatataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatc 121  Q
    ||||||| || ||||||||||| ||| ||||||||||||| || |||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  30069795 gacataatcagataaacttaatcaaaccatggaatgaaaccaacactcacattttgtttactttttcaaggagaaaataacaaacagcatgacacatatc 30069696  T
Q  122 tatttaatatgacatttttg 141  Q
    |||  || ||||||||||||    
T  30069695 tatcaaaaatgacatttttg 30069676  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 30024536 - 30024440
Alignment:
Q  201 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgt 297  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || |||||||    
T  30024536 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgt 30024440  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 30036161 - 30036257
Alignment:
Q  201 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgt 297  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || |||||||    
T  30036161 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgt 30036257  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 30117586 - 30117682
Alignment:
Q  201 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgt 297  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || |||||||    
T  30117586 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgt 30117682  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 30230299 - 30230395
Alignment:
Q  201 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgt 297  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || |||||||    
T  30230299 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgt 30230395  T

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Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 30237592 - 30237688
Alignment:
Q  201 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgt 297  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || |||||||    
T  30237592 gtagaatgcaccttttcgattgagagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgt 30237688  T

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Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 297
Target Start/End: Original strand, 30132343 - 30132439
Alignment:
Q  201 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgt 297  Q
    ||||||||||||| ||| ||||| ||||||| |||||||||| |||| ||||||||||||||||||| ||||||||| |||||||| || |||||||    
T  30132343 gtagaatgcaccttttcgattganagaaggggtactgtatcaactggaacaatttcttggtaatttagagactttggcttgaatagaacaagcttgt 30132439  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 30069611 - 30069515
Alignment:
Q  201 gtagaatgcacctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaataggacgagcttgt 297  Q
    ||||||||||||| ||||||||| || |||| || ||||||| | |||||||| ||| || ||||||||||| |||| ||||||||  |||||||||    
T  30069611 gtagaatgcaccttttcaattgaaaggaggggtagtgtatcaaccgggacaatatctcggcaatttatagacattggcttgaatagttcgagcttgt 30069515  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 30024697 - 30024597
Alignment:
Q  26 ataaacatataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctat 124  Q
    |||| ||||||||||| || |||||||||||| ||||||| |||| ||||||| |  |||||||||  |||||||| |||| |||| | ||| |||||||    
T  30024697 ataagcatataaactttatgaaaacatggaataaaactaacactctcattttgctccctttttcaatgagaaaataacaagtagcacgccacttatctat 30024598  T
Q  125 t 125  Q
    |    
T  30024597 t 30024597  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 30036000 - 30036100
Alignment:
Q  26 ataaacatataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctat 124  Q
    |||| ||||||||||| || |||||||||||| ||||||| |||| ||||||| |  |||||||||  |||||||| |||| |||| | ||| |||||||    
T  30036000 ataagcatataaactttatgaaaacatggaataaaactaacactctcattttgctccctttttcaatgagaaaataacaagtagcacgccacttatctat 30036099  T
Q  125 t 125  Q
    |    
T  30036100 t 30036100  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 30117425 - 30117525
Alignment:
Q  26 ataaacatataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctat 124  Q
    |||| ||||||||||| || |||||||||||| ||||||| |||| ||||||| |  |||||||||  |||||||| |||| |||| | ||| |||||||    
T  30117425 ataagcatataaactttatgaaaacatggaataaaactaacactctcattttgctccctttttcaatgagaaaataacaagtagcacgccacttatctat 30117524  T
Q  125 t 125  Q
    |    
T  30117525 t 30117525  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 30132182 - 30132282
Alignment:
Q  26 ataaacatataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctat 124  Q
    |||| ||||||||||| || |||||||||||| ||||||| |||| ||||||| |  |||||||||  |||||||| |||| |||| | ||| |||||||    
T  30132182 ataagcatataaactttatgaaaacatggaataaaactaacactctcattttgctccctttttcaatgagaaaataacaagtagcacgccacttatctat 30132281  T
Q  125 t 125  Q
    |    
T  30132282 t 30132282  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 125
Target Start/End: Original strand, 30230138 - 30230238
Alignment:
Q  26 ataaacatataaacttaataaaaacatggaatgaaactaa-actcgcattttgtttactttttcaagaagaaaatagcaagcagcatgacacatatctat 124  Q
    |||| ||||||||||| || |||||||||||| ||||||| |||| ||||||| |  |||||||||  |||||||| |||| |||| | ||| |||||||    
T  30230138 ataagcatataaactttatgaaaacatggaataaaactaacactctcattttgctccctttttcaatgagaaaataacaagtagcacgccacttatctat 30230237  T
Q  125 t 125  Q
    |    
T  30230238 t 30230238  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 286
Target Start/End: Complemental strand, 30791664 - 30791588
Alignment:
Q  210 acctgttcaattgagagaagggatactgtatcagctgggacaatttcttggtaatttatagactttggtttgaatag 286  Q
    |||| |||||||||||||||||  | ||||||| |||||||| | ||| |||||| || || |||||| ||||||||    
T  30791664 accttttcaattgagagaaggggaagtgtatcaactgggacactgtctcggtaatatagagtctttggcttgaatag 30791588  T

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