View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14078_low_7 (Length: 300)
Name: NF14078_low_7
Description: NF14078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14078_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 37513811 - 37514110
Alignment:
| Q |
1 |
acatttcaaatcgaatgcatgtccgatatccgacacacaaggttacattcaattactcctattttcaaattcaaatcattcgctaagactcatttaaaaa |
100 |
Q |
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| T |
37513811 |
acatttcaaatcgaatgcatgtccgatatccgacacacaaggttacattcaattactcctattttcaaattcaaatcattcgctaagactcatttaaaaa |
37513910 |
T |
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| Q |
101 |
aggtatgataacacacgaaccggggattttggaaagatatcagcaagaagttttctgtaacgtttgactggttgtcttgatcttgacctcaaagcaggac |
200 |
Q |
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| T |
37513911 |
aggtatgataacacacgaaccggggattttggaaagatatcagcaagaagttttctgtaacgtttgactggttgtcttgatcttgacctcaaagcaggac |
37514010 |
T |
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| Q |
201 |
agcaaacacacatgctctcacaagctgggaagatcttccttgagatgacccccattttctacacaattcccaaatgagacaacaaaaaatgtagccaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37514011 |
agcaaacacacatgctctcacaagctgggaagatcttccttgagatgacccccattttctacacaattcccaaatgagacaacaaaaaatgtagccaaat |
37514110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 36842289 - 36842044
Alignment:
| Q |
1 |
acatttcaaatcgaatgcatgtccgatatccgacacacaaggttacattcaattactcctattttcaaattcaaatcattcgctaagactcatttaaaaa |
100 |
Q |
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|||||||||||||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| |
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| T |
36842289 |
acatttcaaatcgaatgcatgtccaatgtgcgacacacgtggttacattcaattactcctattttcaaatttaaatcattcgctaaaactcattaaaaaa |
36842190 |
T |
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| Q |
101 |
aggtatgataacacacgaaccggggattttggaaagatatcagcaagaagttttctgtaacgtttgactggttgtcttgatcttgacctcaaagcaggac |
200 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
36842189 |
aggtatgataacacatgaaccggggattttggaaaaatatcagcaagaagttttctgtaacatttgactggctgtcttgatcttgacctcaaagcaggac |
36842090 |
T |
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| Q |
201 |
-agcaaacacacatgctctcacaagctgggaagatcttccttgaga |
245 |
Q |
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| T |
36842089 |
aagtaaacacacatgctctcacaagctgggaagatattccttgaga |
36842044 |
T |
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