View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14079_high_10 (Length: 294)
Name: NF14079_high_10
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14079_high_10 |
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| [»] scaffold0275 (3 HSPs) |
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Alignment Details
Target: scaffold0275 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: scaffold0275
Description:
Target: scaffold0275; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 7846 - 7606
Alignment:
| Q |
24 |
gcttgctggtatttatttttattcctttgcaattctacttcattcatagcttttcatcattctcttctgttcatttcaattcaattgttgcttctttttt |
123 |
Q |
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| T |
7846 |
gcttgctggtatttatttttattcttttgcaattctacttcattcatagcttttcatcattctcttctgttcatttcaattcaattgttgcttctttttt |
7747 |
T |
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| Q |
124 |
ataaattatattattcgaatctgttctcta-nnnnnnngggggtattattagggtttaaaaccttaaattaggctgtcagaaattttcatgaaattaaaa |
222 |
Q |
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| T |
7746 |
ataaattatattattcgaatctgttctatattttttttgggggtattattagggtttaaaaccttaaattaggctgtcagaaattttcatgaaattaaaa |
7647 |
T |
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| Q |
223 |
ccctcaatcacactatattattattttaat-tgttctggat |
262 |
Q |
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| T |
7646 |
ccctcaatcacactatattattattttaatctgttctggat |
7606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0275; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 24 - 284
Target Start/End: Complemental strand, 22312 - 22064
Alignment:
| Q |
24 |
gcttgctggtatttatttttattcctttgcaattctacttcattcatagcttttcatcattctcttctgttcatttcaattcaattgttgcttctttttt |
123 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22312 |
gcttgctggtatttatttttattcttttgcaattctacttcat--------------cattctcttctgttcatttcaattcaattgttgcttctttttt |
22227 |
T |
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| Q |
124 |
ataaattatattattcgaatctgttctctannnnnnn-gggggtattattagggtttaaaaccttaaattaggctgtcagaaattttcatgaaattaaaa |
222 |
Q |
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| T |
22226 |
ataaattatattattcgaatctgttctatattttttttgggggtattattagggtttaaaaccttaaattaggctgtcagaaattttcatgaaattaaaa |
22127 |
T |
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| Q |
223 |
ccctcaatcacactatattattattttaat-tgttctggatattatctgccatctctcctttg |
284 |
Q |
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| T |
22126 |
ccctcaatcacactatattattattttaatctgttctggatattatctgccatctctcctttg |
22064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0275; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 76 - 262
Target Start/End: Complemental strand, 13413 - 13225
Alignment:
| Q |
76 |
ttcatcattctcttctgttcatttcaattcaattgttgcttcttttttataaattatattattcgaatctgttctctannnnnnn-gggggtattattag |
174 |
Q |
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| T |
13413 |
ttcatcattctcttctgttcatttcaattcaattgttgcttcttttttataaattatattattcgaatctgttctatattttttttgggggtattattag |
13314 |
T |
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| Q |
175 |
ggtttaaaaccttaaattaggctgtcagaaattttcatgaaattaaaaccctcaatcacactatattattattttaat-tgttctggat |
262 |
Q |
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| T |
13313 |
ggtttaaaaccttaaattaggctgtcagaaattttcatgaaattaaaaccctcaatcacactatattattattttaatctgttctggat |
13225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 5003484 - 5003522
Alignment:
| Q |
73 |
cttttcatcattctcttctgttcatttcaattcaattgtt |
112 |
Q |
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| T |
5003484 |
cttttcatcattctcttctg-tcatttcaattcaattgtt |
5003522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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