View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14079_high_12 (Length: 249)
Name: NF14079_high_12
Description: NF14079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14079_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 27897999 - 27897770
Alignment:
| Q |
1 |
ttcataattttgacaagtcaagtacatctccccttcccctacctaattgtgaattgaagctgcatgtcaattgaaagtgtaacccgcacgtgcatcatac |
100 |
Q |
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| T |
27897999 |
ttcataaatttgacaagttaagtacatctccccttcccctacctaattgtgaattgaagctgcatgtcaattgaaagtgtaacccgcacgtgcatcatac |
27897900 |
T |
|
| Q |
101 |
cccaaccgacattacccaaaatgttttacttgtatggggcacactgtacacgtgatgatccttaaaccaactttgtgacatacgtattagccaagaaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27897899 |
cccaaccgacattacccaaaatgttttacttgtatggggcacactgtacacgtgatgatccttaaaccaactttgtgacatacgtattagccaag----- |
27897805 |
T |
|
| Q |
201 |
agtaaagaaaaccatattaataaaggggttatagtagtataa |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
27897804 |
-------aaaaccatattaataaaggggttatagtagtataa |
27897770 |
T |
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